MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.6 nTPM
HPA Brain:114.9 nTPM
GTEx:108.6 nTPM
FANTOM5:300.4 Scaled Tags Per Million
Pig:68.4 nTPM
Mouse:54.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 114.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.7
1870 Female, age 42, unknown 121.2
1830 Male, age 51, unknown 115.4
2411 Female, age 72, unknown 109.4
1833 Male, age 53, unknown 104.4
2019 Male, age 18, unknown 104.1
2828 Female, age 72, unknown 82.8
2666 Male, age 74, left hemisphere 75.6
2586 Male, age 75, left hemisphere 68.6
1827 Male, age 72, unknown 63.7
2219 Male, age 76, both hemispheres 62.2
Dorsal raphe nucleus
nTPM: 78.7
2750 Male, age 76, both hemispheres 109.6
2016 Female, age 72, unknown 84.4
1828 Male, age 53, unknown 74.2
2047 Male, age 72, unknown 65.3
2298 Female, age 72, unknown 59.7
Inferior colliculus
nTPM: 70.0
1848 Female, age 42, unknown 73.7
1890 Male, age 53, unknown 71.7
2097 Female, age 72, unknown 68.6
2849 Male, age 72, unknown 66.1
Median raphe nucleus
nTPM: 76.3
2220 Male, age 76, midline 76.3
Periaquaductal grey, anterior
nTPM: 66.4
2502 Female, age 75, unknown 79.7
1947 Male, age 18, unknown 66.0
1795 Male, age 51, unknown 53.5
Periaquaductal grey, dorsal
nTPM: 64.7
2464 Female, age 72, unknown 77.1
2850 Male, age 76, both hemispheres 66.6
1831 Male, age 72, unknown 64.7
1840 Male, age 53, unknown 50.2
Periaquaductal grey, lateral
nTPM: 66.5
2053 Male, age 18, unknown 68.1
2272 Male, age 74, both hemispheres 65.8
2140 Male, age 76, both hemispheres 65.7
Pretectal area
nTPM: 67.2
2316 Male, age 76, right hemisphere 83.8
1815 Male, age 53, unknown 83.5
1817 Female, age 42, unknown 74.2
2667 Female, age 75, unknown 68.2
2825 Male, age 18, unknown 66.8
2273 Male, age 74, both hemispheres 66.6
2407 Male, age 75, both hemispheres 64.9
2224 Female, age 72, unknown 64.4
2007 Male, age 72, unknown 63.7
1944 Female, age 72, unknown 54.8
1816 Male, age 51, unknown 47.8
Red nucleus
nTPM: 114.9
1865 Male, age 51, unknown 144.5
1904 Male, age 53, unknown 139.5
1821 Female, age 72, unknown 133.1
1954 Female, age 42, unknown 128.0
2227 Male, age 72, unknown 125.0
2769 Male, age 72, unknown 124.1
2785 Male, age 18, unknown 112.5
2503 Female, age 72, unknown 109.7
2823 Male, age 76, right hemisphere 107.0
2588 Male, age 74, left hemisphere 97.0
2725 Female, age 75, unknown 82.3
2584 Male, age 75, left hemisphere 76.0
Substantia nigra
nTPM: 78.6
2409 Female, age 72, unknown 91.5
1851 Male, age 51, unknown 88.3
2699 Male, age 18, unknown 86.9
2590 Female, age 75, unknown 82.0
2241 Male, age 72, unknown 80.1
1889 Female, age 72, unknown 77.2
2583 Male, age 75, right hemisphere 74.6
2665 Male, age 74, both hemispheres 72.1
1941 Male, age 53, unknown 67.7
1916 Female, age 42, unknown 65.9
Superior colliculus
nTPM: 79.9
1913 Female, age 42, unknown 120.0
1995 Male, age 72, unknown 110.2
2587 Male, age 74, left hemisphere 87.4
2668 Female, age 75, unknown 81.4
1839 Male, age 51, unknown 80.3
1895 Male, age 76, right hemisphere 76.2
1796 Male, age 53, unknown 65.4
2664 Male, age 75, both hemispheres 62.2
2087 Female, age 72, unknown 58.9
2261 Male, age 18, unknown 57.2
Ventral tegmental area
nTPM: 90.7
2223 Female, age 72, unknown 127.1
2410 Female, age 72, unknown 105.9
2021 Male, age 53, unknown 84.7
1942 Male, age 51, unknown 76.8
2218 Male, age 76, both hemispheres 75.6
1915 Female, age 42, unknown 74.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 108.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.6
Samples: 139

Max nTPM: 245.4
Min nTPM: 36.5
Std nTPM: 35.1
Median nTPM: 105.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 245.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 210.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 197.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 183.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 174.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 173.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 168.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 167.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 165.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 163.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 160.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 300.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 300.4
FF:10158-103A5 76 years, female 300.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.9
Samples: 4

Max nTPM: 83.1
Min nTPM: 51.7
Sample A Female 75.8
Sample B Female 61.0
Sample C Male 51.7
Sample D Male 83.1
Midbrain
nTPM: 68.4
Samples: 4

Max nTPM: 143.2
Min nTPM: 36.4
Sample A Female 143.2
Sample B Female 57.3
Sample C Male 36.8
Sample D Male 36.4
Periaqueductal gray
nTPM: 46.2
Samples: 3

Max nTPM: 51.1
Min nTPM: 40.6
Sample B Female 51.1
Sample C Male 40.6
Sample D Male 46.8
Superior colliculi
nTPM: 60.2
Samples: 4

Max nTPM: 73.8
Min nTPM: 48.5
Sample A Female 73.8
Sample B Female 61.4
Sample C Male 48.5
Sample D Male 57.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.3
Samples: 4

Max nTPM: 57.4
Min nTPM: 51.4
Sample A Male 55.5
Sample B Male 51.4
Sample C Female 53.0
Sample D Female 57.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71378603 Antisense, RP_050517_02_A01, Mouse strain C57BL/6J (56 days, male) 0.2
70919812 Antisense, RP_050713_02_B02, Mouse strain C57BL/6J (56 days, male) 0.1

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