MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.8 nTPM
HPA Brain:24.6 nTPM
GTEx:20.8 nTPM
FANTOM5:15.2 Scaled Tags Per Million
Pig:12.7 nTPM
Mouse:14.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
2586 Male, age 75, left hemisphere 31.8
2019 Male, age 18, unknown 26.7
2666 Male, age 74, left hemisphere 25.5
1827 Male, age 72, unknown 22.7
2411 Female, age 72, unknown 22.6
2828 Female, age 72, unknown 22.1
2219 Male, age 76, both hemispheres 21.1
1830 Male, age 51, unknown 21.0
1870 Female, age 42, unknown 20.7
1833 Male, age 53, unknown 17.8
Dorsal raphe nucleus
nTPM: 21.6
1828 Male, age 53, unknown 24.0
2750 Male, age 76, both hemispheres 22.9
2047 Male, age 72, unknown 21.9
2016 Female, age 72, unknown 19.8
2298 Female, age 72, unknown 19.2
Inferior colliculus
nTPM: 20.8
1890 Male, age 53, unknown 22.9
2097 Female, age 72, unknown 21.8
1848 Female, age 42, unknown 19.3
2849 Male, age 72, unknown 19.3
Median raphe nucleus
nTPM: 20.4
2220 Male, age 76, midline 20.4
Periaquaductal grey, anterior
nTPM: 24.6
2502 Female, age 75, unknown 25.4
1795 Male, age 51, unknown 24.3
1947 Male, age 18, unknown 24.2
Periaquaductal grey, dorsal
nTPM: 18.2
1840 Male, age 53, unknown 18.7
2464 Female, age 72, unknown 18.4
1831 Male, age 72, unknown 18.1
2850 Male, age 76, both hemispheres 17.4
Periaquaductal grey, lateral
nTPM: 18.0
2272 Male, age 74, both hemispheres 18.5
2053 Male, age 18, unknown 17.9
2140 Male, age 76, both hemispheres 17.7
Pretectal area
nTPM: 23.6
2007 Male, age 72, unknown 29.2
2667 Female, age 75, unknown 27.7
1817 Female, age 42, unknown 25.3
1816 Male, age 51, unknown 23.9
2407 Male, age 75, both hemispheres 23.6
2273 Male, age 74, both hemispheres 23.3
1815 Male, age 53, unknown 23.1
2316 Male, age 76, right hemisphere 22.1
2825 Male, age 18, unknown 21.7
1944 Female, age 72, unknown 21.2
2224 Female, age 72, unknown 18.2
Red nucleus
nTPM: 23.7
2769 Male, age 72, unknown 27.5
2584 Male, age 75, left hemisphere 26.9
2588 Male, age 74, left hemisphere 26.7
2227 Male, age 72, unknown 25.9
2785 Male, age 18, unknown 24.5
2503 Female, age 72, unknown 24.4
1904 Male, age 53, unknown 23.2
1821 Female, age 72, unknown 23.0
1865 Male, age 51, unknown 22.7
1954 Female, age 42, unknown 22.0
2823 Male, age 76, right hemisphere 20.1
2725 Female, age 75, unknown 17.8
Substantia nigra
nTPM: 22.1
2583 Male, age 75, right hemisphere 27.0
1916 Female, age 42, unknown 26.8
1941 Male, age 53, unknown 23.9
1851 Male, age 51, unknown 23.7
1889 Female, age 72, unknown 23.0
2665 Male, age 74, both hemispheres 22.2
2409 Female, age 72, unknown 21.2
2590 Female, age 75, unknown 18.4
2699 Male, age 18, unknown 18.0
2241 Male, age 72, unknown 17.0
Superior colliculus
nTPM: 22.0
2668 Female, age 75, unknown 28.0
2664 Male, age 75, both hemispheres 25.2
2261 Male, age 18, unknown 24.3
1895 Male, age 76, right hemisphere 22.7
1796 Male, age 53, unknown 22.4
1839 Male, age 51, unknown 21.4
1913 Female, age 42, unknown 19.6
2087 Female, age 72, unknown 19.3
2587 Male, age 74, left hemisphere 19.0
1995 Male, age 72, unknown 18.7
Ventral tegmental area
nTPM: 20.8
1915 Female, age 42, unknown 22.8
1942 Male, age 51, unknown 22.1
2223 Female, age 72, unknown 21.0
2410 Female, age 72, unknown 20.1
2218 Male, age 76, both hemispheres 19.7
2021 Male, age 53, unknown 19.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.8
Samples: 139

Max nTPM: 53.0
Min nTPM: 8.5
Std nTPM: 6.9
Median nTPM: 19.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 39.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 38.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 37.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 36.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 33.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 33.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 32.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 30.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 30.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.2
FF:10158-103A5 76 years, female 15.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.9
Samples: 4

Max nTPM: 12.4
Min nTPM: 7.2
Sample A Female 12.4
Sample B Female 7.2
Sample C Male 12.4
Sample D Male 7.7
Midbrain
nTPM: 12.7
Samples: 4

Max nTPM: 15.4
Min nTPM: 10.2
Sample A Female 10.2
Sample B Female 10.2
Sample C Male 15.0
Sample D Male 15.4
Periaqueductal gray
nTPM: 10.4
Samples: 3

Max nTPM: 12.3
Min nTPM: 9.2
Sample B Female 9.7
Sample C Male 12.3
Sample D Male 9.2
Superior colliculi
nTPM: 12.6
Samples: 4

Max nTPM: 15.0
Min nTPM: 8.4
Sample A Female 13.0
Sample B Female 8.4
Sample C Male 15.0
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 15.8
Min nTPM: 13.6
Sample A Male 15.8
Sample B Male 13.6
Sample C Female 13.8
Sample D Female 14.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69817229 Antisense, RP_050510_02_H08, Mouse strain C57BL/6J (56 days, male) 0.2

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