MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:14.3 nTPM
GTEx:16.6 nTPM
FANTOM5:22.2 Scaled Tags Per Million
Pig:9.6 nTPM
Mouse:7.2 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.3
2219 Male, age 76, both hemispheres 30.9
1830 Male, age 51, unknown 15.5
1870 Female, age 42, unknown 14.3
2411 Female, age 72, unknown 14.0
1833 Male, age 53, unknown 13.3
2019 Male, age 18, unknown 12.9
2666 Male, age 74, left hemisphere 11.8
2828 Female, age 72, unknown 10.8
1827 Male, age 72, unknown 9.9
2586 Male, age 75, left hemisphere 9.8
Dorsal raphe nucleus
nTPM: 10.5
2750 Male, age 76, both hemispheres 14.5
2016 Female, age 72, unknown 12.3
1828 Male, age 53, unknown 10.1
2047 Male, age 72, unknown 8.5
2298 Female, age 72, unknown 7.3
Inferior colliculus
nTPM: 10.6
1890 Male, age 53, unknown 12.0
2849 Male, age 72, unknown 10.7
1848 Female, age 42, unknown 10.4
2097 Female, age 72, unknown 9.4
Median raphe nucleus
nTPM: 10.2
2220 Male, age 76, midline 10.2
Periaquaductal grey, anterior
nTPM: 10.0
2502 Female, age 75, unknown 12.1
1947 Male, age 18, unknown 10.2
1795 Male, age 51, unknown 7.8
Periaquaductal grey, dorsal
nTPM: 9.7
2464 Female, age 72, unknown 12.4
1831 Male, age 72, unknown 10.3
1840 Male, age 53, unknown 8.3
2850 Male, age 76, both hemispheres 7.9
Periaquaductal grey, lateral
nTPM: 9.3
2272 Male, age 74, both hemispheres 10.0
2053 Male, age 18, unknown 9.3
2140 Male, age 76, both hemispheres 8.5
Pretectal area
nTPM: 9.9
2316 Male, age 76, right hemisphere 12.2
2667 Female, age 75, unknown 11.6
2825 Male, age 18, unknown 11.0
2007 Male, age 72, unknown 10.3
2407 Male, age 75, both hemispheres 10.3
1815 Male, age 53, unknown 9.9
1817 Female, age 42, unknown 8.9
2224 Female, age 72, unknown 8.9
2273 Male, age 74, both hemispheres 8.9
1944 Female, age 72, unknown 8.6
1816 Male, age 51, unknown 8.1
Red nucleus
nTPM: 13.8
1865 Male, age 51, unknown 16.6
1821 Female, age 72, unknown 15.2
2769 Male, age 72, unknown 14.8
2227 Male, age 72, unknown 14.5
2823 Male, age 76, right hemisphere 14.3
2785 Male, age 18, unknown 14.2
1904 Male, age 53, unknown 14.0
2588 Male, age 74, left hemisphere 13.6
1954 Female, age 42, unknown 13.3
2503 Female, age 72, unknown 13.0
2584 Male, age 75, left hemisphere 11.2
2725 Female, age 75, unknown 11.0
Substantia nigra
nTPM: 12.2
1941 Male, age 53, unknown 17.0
2409 Female, age 72, unknown 16.1
2699 Male, age 18, unknown 13.3
2241 Male, age 72, unknown 12.1
2665 Male, age 74, both hemispheres 11.8
1851 Male, age 51, unknown 11.4
2590 Female, age 75, unknown 10.8
1889 Female, age 72, unknown 10.6
2583 Male, age 75, right hemisphere 10.6
1916 Female, age 42, unknown 8.0
Superior colliculus
nTPM: 11.3
1913 Female, age 42, unknown 17.5
1995 Male, age 72, unknown 13.7
2587 Male, age 74, left hemisphere 12.4
1839 Male, age 51, unknown 12.3
1895 Male, age 76, right hemisphere 11.7
2668 Female, age 75, unknown 10.6
2087 Female, age 72, unknown 9.4
2261 Male, age 18, unknown 8.7
2664 Male, age 75, both hemispheres 8.7
1796 Male, age 53, unknown 8.1
Ventral tegmental area
nTPM: 11.8
2223 Female, age 72, unknown 15.8
1942 Male, age 51, unknown 12.0
2021 Male, age 53, unknown 11.3
1915 Female, age 42, unknown 10.6
2218 Male, age 76, both hemispheres 10.6
2410 Female, age 72, unknown 10.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.6
Samples: 139

Max nTPM: 28.4
Min nTPM: 6.1
Std nTPM: 4.6
Median nTPM: 15.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 28.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 27.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 27.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 27.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 27.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 25.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 24.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 24.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 24.1
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 23.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 23.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.2
FF:10158-103A5 76 years, female 22.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.7
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 12.0
Sample C Male 8.8
Sample D Male 9.4
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 13.7
Min nTPM: 5.1
Sample A Female 13.7
Sample B Female 7.6
Sample C Male 7.0
Sample D Male 5.1
Periaqueductal gray
nTPM: 6.8
Samples: 3

Max nTPM: 7.0
Min nTPM: 6.4
Sample B Female 7.0
Sample C Male 6.4
Sample D Male 7.0
Superior colliculi
nTPM: 9.2
Samples: 4

Max nTPM: 13.1
Min nTPM: 7.3
Sample A Female 8.4
Sample B Female 13.1
Sample C Male 7.9
Sample D Male 7.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.9
Sample A Male 7.7
Sample B Male 7.1
Sample C Female 6.9
Sample D Female 7.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
68443507 Antisense, RP_050111_02_B04, Mouse strain C57BL/6J (56 days, male) 1.8

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