HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:43.9 nTPM
HPA Brain:48.2 nTPM
GTEx:43.9 nTPM
FANTOM5:109.2 Scaled Tags Per Million
Pig:56.6 nTPM
Mouse:46.3 nTPM
Allen mouse:11.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040754Antibody HPA041219Antibody CAB037041Antibody CAB037104
Glial cells Not detectedLowNot detectedLow
Neuronal cells Not detectedMediumLowLow









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.2
Sample id Sample description nTPM
Hippocampus
nTPM: 43.6
1855 Male, age 76, left hemisphere 48.6
2529 Female, age 94, left hemisphere 46.3
2621 Female, age 67, right hemisphere 45.0
1898 Male, age 80, left hemisphere 41.8
2148 Female, age 91, left hemisphere 41.6
1911 Female, age 85, right hemisphere 38.4
Dentate gyrus
nTPM: 43.9
2010 Male, age 76, both hemispheres 65.0
2530 Female, age 94, left hemisphere 42.3
2531 Female, age 67, both hemispheres 41.6
2528 Male, age 74, both hemispheres 40.9
2246 Female, age 85, both hemispheres 38.4
1927 Female, age 91, both hemispheres 35.2
Entorhinal gyrus
nTPM: 36.5
1787 Male, age 76, left hemisphere 47.7
2117 Female, age 91, right hemisphere 38.9
1938 Female, age 85, left hemisphere 37.5
2613 Female, age 94, left hemisphere 34.5
2764 Male, age 80, right hemisphere 30.4
2686 Male, age 75, right hemisphere 30.0
Hippocampus, CA1
nTPM: 42.2
2045 Male, age 76, both hemispheres 53.3
2749 Male, age 80, left hemisphere 43.7
2527 Male, age 74, both hemispheres 39.1
1873 Female, age 85, both hemispheres 39.0
2082 Female, age 91, right hemisphere 36.1
Hippocampus, CA2
nTPM: 40.5
1892 Male, age 76, both hemispheres 43.1
1940 Female, age 85, left hemisphere 42.8
2437 Female, age 94, left hemisphere 41.9
1963 Male, age 80, left hemisphere 41.4
2113 Female, age 91, right hemisphere 40.4
2249 Male, age 74, both hemispheres 33.2
Hippocampus, CA3
nTPM: 44.2
1867 Male, age 76, both hemispheres 52.2
2861 Female, age 67, both hemispheres 44.9
2436 Male, age 74, both hemispheres 44.8
2620 Female, age 94, left hemisphere 43.6
2137 Male, age 80, left hemisphere 42.6
1891 Female, age 85, both hemispheres 37.4
Parahippocampal cortex
nTPM: 39.8
2018 Male, age 76, both hemispheres 56.3
2245 Female, age 91, both hemispheres 42.6
2250 Female, age 67, right hemisphere 40.0
1990 Female, age 91, right hemisphere 39.3
2532 Female, age 72, left hemisphere 38.3
2622 Female, age 67, right hemisphere 38.2
2693 Female, age 94, both hemispheres 37.7
2692 Male, age 74, both hemispheres 35.6
1850 Male, age 80, both hemispheres 35.4
1933 Female, age 85, both hemispheres 34.3
Perirhinal gyrus
nTPM: 39.3
1841 Female, age 85, right hemisphere 46.0
2521 Female, age 94, right hemisphere 44.0
2848 Male, age 76, right hemisphere 37.4
1794 Male, age 80, right hemisphere 35.0
1847 Female, age 91, left hemisphere 34.1
Subiculum
nTPM: 48.2
2438 Female, age 94, left hemisphere 66.0
2042 Male, age 76, both hemispheres 63.4
2619 Male, age 74, both hemispheres 45.3
2729 Female, age 91, right hemisphere 40.2
1977 Female, age 85, both hemispheres 37.6
1901 Male, age 80, both hemispheres 36.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.9
Samples: 197

Max nTPM: 106.6
Min nTPM: 17.7
Std nTPM: 14.2
Median nTPM: 40.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 106.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 101.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 95.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 82.9
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 80.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 80.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 74.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 72.7
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 72.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 70.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 69.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 109.2
FF:10153-102I9 76 years, female 122.9
FF:10169-103B7 60 years, female 95.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 56.6
Pig sample Sample description nTPM
Subiculum
nTPM: 50.9
Samples: 4

Max nTPM: 60.4
Min nTPM: 45.8
Sample A Female 60.4
Sample B Female 45.8
Sample C Male 51.2
Sample D Male 46.0
Dorsal hippocampus
nTPM: 53.5
Samples: 4

Max nTPM: 59.6
Min nTPM: 44.6
Sample A Female 59.6
Sample B Female 57.9
Sample C Male 51.9
Sample D Male 44.6
Entorhinal cortex
nTPM: 56.5
Samples: 4

Max nTPM: 66.1
Min nTPM: 50.8
Sample A Female 66.1
Sample B Female 56.9
Sample C Male 52.3
Sample D Male 50.8
Ventral hippocampus
nTPM: 55.4
Samples: 4

Max nTPM: 63.4
Min nTPM: 39.4
Sample A Female 55.5
Sample B Female 39.4
Sample C Male 63.4
Sample D Male 63.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 46.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 46.3
Samples: 4

Max nTPM: 49.2
Min nTPM: 41.4
Sample A Male 45.4
Sample B Male 49.0
Sample C Female 49.2
Sample D Female 41.4
Hippocampal formation
nTPM: 46.0
Samples: 4

Max nTPM: 54.0
Min nTPM: 39.5
Sample A Male 39.5
Sample B Male 42.0
Sample C Female 54.0
Sample D Female 48.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.2
686221 Antisense, RP_040916_01_C07, Mouse strain C57BL/6J (56 days, male) 11.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org