MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.7 nTPM
HPA Brain:59.9 nTPM
GTEx:52.7 nTPM
FANTOM5:185.2 Scaled Tags Per Million
Pig:73.0 nTPM
Mouse:61.2 nTPM
Allen mouse:11.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.5
2666 Male, age 74, left hemisphere 82.4
2019 Male, age 18, unknown 66.5
1870 Female, age 42, unknown 52.0
1830 Male, age 51, unknown 50.8
1833 Male, age 53, unknown 48.1
1827 Male, age 72, unknown 47.4
2411 Female, age 72, unknown 46.4
2219 Male, age 76, both hemispheres 44.5
2828 Female, age 72, unknown 44.1
2586 Male, age 75, left hemisphere 33.0
Dorsal raphe nucleus
nTPM: 45.3
2298 Female, age 72, unknown 53.4
1828 Male, age 53, unknown 48.6
2016 Female, age 72, unknown 44.9
2750 Male, age 76, both hemispheres 42.5
2047 Male, age 72, unknown 36.9
Inferior colliculus
nTPM: 50.0
2097 Female, age 72, unknown 55.3
1890 Male, age 53, unknown 52.3
2849 Male, age 72, unknown 48.0
1848 Female, age 42, unknown 44.4
Median raphe nucleus
nTPM: 56.4
2220 Male, age 76, midline 56.4
Periaquaductal grey, anterior
nTPM: 48.1
2502 Female, age 75, unknown 53.7
1947 Male, age 18, unknown 47.5
1795 Male, age 51, unknown 43.0
Periaquaductal grey, dorsal
nTPM: 50.7
2850 Male, age 76, both hemispheres 61.7
1831 Male, age 72, unknown 57.4
2464 Female, age 72, unknown 46.1
1840 Male, age 53, unknown 37.4
Periaquaductal grey, lateral
nTPM: 51.0
2140 Male, age 76, both hemispheres 54.1
2272 Male, age 74, both hemispheres 53.3
2053 Male, age 18, unknown 45.7
Pretectal area
nTPM: 53.7
2007 Male, age 72, unknown 68.7
1817 Female, age 42, unknown 68.3
1815 Male, age 53, unknown 65.0
1944 Female, age 72, unknown 62.5
1816 Male, age 51, unknown 61.7
2407 Male, age 75, both hemispheres 51.8
2224 Female, age 72, unknown 47.7
2667 Female, age 75, unknown 43.4
2273 Male, age 74, both hemispheres 42.4
2316 Male, age 76, right hemisphere 40.9
2825 Male, age 18, unknown 38.3
Red nucleus
nTPM: 55.3
2785 Male, age 18, unknown 65.4
2588 Male, age 74, left hemisphere 63.5
1904 Male, age 53, unknown 62.4
1954 Female, age 42, unknown 62.0
1821 Female, age 72, unknown 60.3
1865 Male, age 51, unknown 59.9
2503 Female, age 72, unknown 54.3
2769 Male, age 72, unknown 49.2
2725 Female, age 75, unknown 48.8
2227 Male, age 72, unknown 47.8
2584 Male, age 75, left hemisphere 46.5
2823 Male, age 76, right hemisphere 44.2
Substantia nigra
nTPM: 59.9
2665 Male, age 74, both hemispheres 90.6
2241 Male, age 72, unknown 60.3
2590 Female, age 75, unknown 58.7
1916 Female, age 42, unknown 58.1
2409 Female, age 72, unknown 58.0
1889 Female, age 72, unknown 57.2
1851 Male, age 51, unknown 56.9
1941 Male, age 53, unknown 54.2
2699 Male, age 18, unknown 53.3
2583 Male, age 75, right hemisphere 51.6
Superior colliculus
nTPM: 48.3
2587 Male, age 74, left hemisphere 60.3
2668 Female, age 75, unknown 58.0
1995 Male, age 72, unknown 52.7
1913 Female, age 42, unknown 52.1
2261 Male, age 18, unknown 51.1
1796 Male, age 53, unknown 50.2
2087 Female, age 72, unknown 47.8
1839 Male, age 51, unknown 44.2
2664 Male, age 75, both hemispheres 34.8
1895 Male, age 76, right hemisphere 32.0
Ventral tegmental area
nTPM: 49.5
2410 Female, age 72, unknown 58.7
1915 Female, age 42, unknown 50.8
2223 Female, age 72, unknown 48.7
2218 Male, age 76, both hemispheres 47.7
1942 Male, age 51, unknown 47.1
2021 Male, age 53, unknown 44.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.7
Samples: 139

Max nTPM: 110.2
Min nTPM: 18.9
Std nTPM: 18.3
Median nTPM: 47.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 110.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 109.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 109.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 105.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 101.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 100.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 100.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 97.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 96.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 95.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 89.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 185.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 185.2
FF:10158-103A5 76 years, female 185.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.6
Samples: 4

Max nTPM: 66.5
Min nTPM: 38.6
Sample A Female 66.5
Sample B Female 49.7
Sample C Male 55.7
Sample D Male 38.6
Midbrain
nTPM: 63.2
Samples: 4

Max nTPM: 78.7
Min nTPM: 47.5
Sample A Female 60.6
Sample B Female 47.5
Sample C Male 78.7
Sample D Male 65.8
Periaqueductal gray
nTPM: 55.5
Samples: 3

Max nTPM: 61.9
Min nTPM: 45.1
Sample B Female 45.1
Sample C Male 59.5
Sample D Male 61.9
Superior colliculi
nTPM: 73.0
Samples: 4

Max nTPM: 75.4
Min nTPM: 70.4
Sample A Female 75.4
Sample B Female 70.4
Sample C Male 74.7
Sample D Male 71.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.2
Samples: 4

Max nTPM: 65.5
Min nTPM: 56.2
Sample A Male 58.6
Sample B Male 56.2
Sample C Female 65.5
Sample D Female 64.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
686221 Antisense, RP_040916_01_C07, Mouse strain C57BL/6J (56 days, male) 11.1

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