MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.5 nTPM
HPA Brain:34.5 nTPM
GTEx:40.5 nTPM
FANTOM5:46.0 Scaled Tags Per Million
Pig:77.1 nTPM
Mouse:96.0 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.8
2411 Female, age 72, unknown 34.2
2586 Male, age 75, left hemisphere 34.0
1827 Male, age 72, unknown 33.9
1870 Female, age 42, unknown 33.8
2019 Male, age 18, unknown 30.5
1833 Male, age 53, unknown 29.9
2666 Male, age 74, left hemisphere 29.5
1830 Male, age 51, unknown 27.8
2828 Female, age 72, unknown 27.6
2219 Male, age 76, both hemispheres 26.4
Dorsal raphe nucleus
nTPM: 32.6
2298 Female, age 72, unknown 39.3
1828 Male, age 53, unknown 33.5
2016 Female, age 72, unknown 32.0
2047 Male, age 72, unknown 31.4
2750 Male, age 76, both hemispheres 26.9
Inferior colliculus
nTPM: 34.5
2097 Female, age 72, unknown 36.5
1848 Female, age 42, unknown 36.3
2849 Male, age 72, unknown 33.0
1890 Male, age 53, unknown 32.1
Median raphe nucleus
nTPM: 31.0
2220 Male, age 76, midline 31.0
Periaquaductal grey, anterior
nTPM: 31.6
1947 Male, age 18, unknown 33.9
1795 Male, age 51, unknown 31.8
2502 Female, age 75, unknown 29.0
Periaquaductal grey, dorsal
nTPM: 33.1
1840 Male, age 53, unknown 39.2
2850 Male, age 76, both hemispheres 33.8
1831 Male, age 72, unknown 29.9
2464 Female, age 72, unknown 29.5
Periaquaductal grey, lateral
nTPM: 30.0
2140 Male, age 76, both hemispheres 33.8
2053 Male, age 18, unknown 29.7
2272 Male, age 74, both hemispheres 26.6
Pretectal area
nTPM: 32.2
1816 Male, age 51, unknown 35.3
2007 Male, age 72, unknown 34.9
2273 Male, age 74, both hemispheres 34.3
1817 Female, age 42, unknown 33.7
1944 Female, age 72, unknown 33.0
2667 Female, age 75, unknown 32.1
2825 Male, age 18, unknown 31.1
2224 Female, age 72, unknown 31.0
1815 Male, age 53, unknown 30.4
2316 Male, age 76, right hemisphere 29.7
2407 Male, age 75, both hemispheres 28.3
Red nucleus
nTPM: 30.4
1821 Female, age 72, unknown 37.8
2725 Female, age 75, unknown 37.2
2823 Male, age 76, right hemisphere 30.7
2588 Male, age 74, left hemisphere 30.5
2503 Female, age 72, unknown 29.9
2785 Male, age 18, unknown 29.8
2769 Male, age 72, unknown 29.7
1954 Female, age 42, unknown 29.3
1865 Male, age 51, unknown 27.7
2227 Male, age 72, unknown 27.7
1904 Male, age 53, unknown 27.3
2584 Male, age 75, left hemisphere 27.3
Substantia nigra
nTPM: 30.6
1941 Male, age 53, unknown 34.4
1916 Female, age 42, unknown 34.1
2241 Male, age 72, unknown 33.7
1851 Male, age 51, unknown 32.8
1889 Female, age 72, unknown 31.3
2583 Male, age 75, right hemisphere 31.3
2590 Female, age 75, unknown 29.7
2665 Male, age 74, both hemispheres 29.1
2699 Male, age 18, unknown 27.1
2409 Female, age 72, unknown 22.8
Superior colliculus
nTPM: 30.0
1895 Male, age 76, right hemisphere 33.4
2261 Male, age 18, unknown 33.0
2587 Male, age 74, left hemisphere 31.0
1796 Male, age 53, unknown 30.7
2087 Female, age 72, unknown 30.6
1839 Male, age 51, unknown 30.5
1995 Male, age 72, unknown 29.6
1913 Female, age 42, unknown 27.4
2668 Female, age 75, unknown 27.1
2664 Male, age 75, both hemispheres 26.7
Ventral tegmental area
nTPM: 29.3
2410 Female, age 72, unknown 33.3
1915 Female, age 42, unknown 32.8
2218 Male, age 76, both hemispheres 29.6
1942 Male, age 51, unknown 28.7
2021 Male, age 53, unknown 26.2
2223 Female, age 72, unknown 25.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.5
Samples: 139

Max nTPM: 69.6
Min nTPM: 23.9
Std nTPM: 7.7
Median nTPM: 38.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 69.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 67.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 67.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 58.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 56.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 56.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 55.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 54.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 52.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 52.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.0
FF:10158-103A5 76 years, female 46.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 77.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.3
Samples: 4

Max nTPM: 90.4
Min nTPM: 58.7
Sample A Female 90.4
Sample B Female 60.8
Sample C Male 58.7
Sample D Male 59.3
Midbrain
nTPM: 77.1
Samples: 4

Max nTPM: 97.0
Min nTPM: 66.3
Sample A Female 97.0
Sample B Female 72.2
Sample C Male 66.3
Sample D Male 72.9
Periaqueductal gray
nTPM: 64.2
Samples: 3

Max nTPM: 64.6
Min nTPM: 64.0
Sample B Female 64.0
Sample C Male 64.0
Sample D Male 64.6
Superior colliculi
nTPM: 76.5
Samples: 4

Max nTPM: 91.1
Min nTPM: 70.0
Sample A Female 91.1
Sample B Female 71.8
Sample C Male 70.0
Sample D Male 73.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.0
Samples: 4

Max nTPM: 102.3
Min nTPM: 90.5
Sample A Male 97.6
Sample B Male 90.5
Sample C Female 93.5
Sample D Female 102.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
513234 Antisense, RP_040810_01_D01, Mouse strain C57BL/6J (56 days, male) 2.2
75931524 Antisense, RP_060606_01_B03, Mouse strain C57BL/6J (56 days, male) 0.3

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