MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.6 nTPM
HPA Brain:236.6 nTPM
GTEx:50.6 nTPM
FANTOM5:1.9 Scaled Tags Per Million
Pig:59.8 nTPM
Mouse:173.9 nTPM
Allen mouse:15.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 236.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 170.8
2666 Male, age 74, left hemisphere 516.0
2586 Male, age 75, left hemisphere 235.6
1827 Male, age 72, unknown 146.4
2219 Male, age 76, both hemispheres 145.5
2828 Female, age 72, unknown 126.9
2411 Female, age 72, unknown 118.4
1870 Female, age 42, unknown 113.0
2019 Male, age 18, unknown 112.3
1833 Male, age 53, unknown 99.1
1830 Male, age 51, unknown 94.7
Dorsal raphe nucleus
nTPM: 150.7
2047 Male, age 72, unknown 195.1
2298 Female, age 72, unknown 181.3
2750 Male, age 76, both hemispheres 151.0
1828 Male, age 53, unknown 135.2
2016 Female, age 72, unknown 91.1
Inferior colliculus
nTPM: 118.6
2097 Female, age 72, unknown 127.5
1848 Female, age 42, unknown 122.8
2849 Male, age 72, unknown 122.5
1890 Male, age 53, unknown 101.7
Median raphe nucleus
nTPM: 236.6
2220 Male, age 76, midline 236.6
Periaquaductal grey, anterior
nTPM: 139.0
1795 Male, age 51, unknown 173.7
1947 Male, age 18, unknown 130.0
2502 Female, age 75, unknown 113.3
Periaquaductal grey, dorsal
nTPM: 112.3
1840 Male, age 53, unknown 131.3
2850 Male, age 76, both hemispheres 113.6
1831 Male, age 72, unknown 103.1
2464 Female, age 72, unknown 101.3
Periaquaductal grey, lateral
nTPM: 85.4
2053 Male, age 18, unknown 97.6
2140 Male, age 76, both hemispheres 85.8
2272 Male, age 74, both hemispheres 72.9
Pretectal area
nTPM: 127.3
2007 Male, age 72, unknown 185.5
2224 Female, age 72, unknown 180.7
1817 Female, age 42, unknown 177.6
1816 Male, age 51, unknown 169.5
1944 Female, age 72, unknown 149.4
1815 Male, age 53, unknown 139.8
2825 Male, age 18, unknown 130.2
2667 Female, age 75, unknown 115.9
2316 Male, age 76, right hemisphere 61.7
2407 Male, age 75, both hemispheres 48.8
2273 Male, age 74, both hemispheres 41.5
Red nucleus
nTPM: 88.4
2584 Male, age 75, left hemisphere 233.4
2785 Male, age 18, unknown 111.8
1954 Female, age 42, unknown 101.0
2769 Male, age 72, unknown 83.1
1821 Female, age 72, unknown 81.0
2227 Male, age 72, unknown 79.7
2588 Male, age 74, left hemisphere 74.9
1904 Male, age 53, unknown 71.7
1865 Male, age 51, unknown 66.2
2823 Male, age 76, right hemisphere 65.1
2503 Female, age 72, unknown 62.7
2725 Female, age 75, unknown 30.8
Substantia nigra
nTPM: 142.0
1916 Female, age 42, unknown 227.6
2583 Male, age 75, right hemisphere 197.9
2665 Male, age 74, both hemispheres 172.1
1889 Female, age 72, unknown 165.0
1851 Male, age 51, unknown 149.5
1941 Male, age 53, unknown 141.5
2241 Male, age 72, unknown 121.0
2409 Female, age 72, unknown 107.8
2699 Male, age 18, unknown 93.8
2590 Female, age 75, unknown 43.4
Superior colliculus
nTPM: 194.9
2668 Female, age 75, unknown 1063.0
1796 Male, age 53, unknown 148.5
2087 Female, age 72, unknown 138.7
2261 Male, age 18, unknown 123.3
1839 Male, age 51, unknown 118.0
1895 Male, age 76, right hemisphere 87.8
2664 Male, age 75, both hemispheres 75.1
2587 Male, age 74, left hemisphere 72.5
1913 Female, age 42, unknown 63.7
1995 Male, age 72, unknown 58.8
Ventral tegmental area
nTPM: 149.8
1915 Female, age 42, unknown 169.1
2218 Male, age 76, both hemispheres 164.6
2410 Female, age 72, unknown 162.4
2021 Male, age 53, unknown 156.6
1942 Male, age 51, unknown 128.6
2223 Female, age 72, unknown 117.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.6
Samples: 139

Max nTPM: 141.0
Min nTPM: 0.7
Std nTPM: 37.3
Median nTPM: 42.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 141.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 137.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 136.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 135.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 134.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 134.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 133.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 132.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 116.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 115.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 110.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.9
FF:10158-103A5 76 years, female 1.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.8
Samples: 4

Max nTPM: 88.8
Min nTPM: 30.7
Sample A Female 78.3
Sample B Female 41.4
Sample C Male 88.8
Sample D Male 30.7
Midbrain
nTPM: 54.8
Samples: 4

Max nTPM: 76.8
Min nTPM: 25.0
Sample A Female 25.0
Sample B Female 46.3
Sample C Male 71.2
Sample D Male 76.8
Periaqueductal gray
nTPM: 49.9
Samples: 3

Max nTPM: 66.7
Min nTPM: 41.2
Sample B Female 41.2
Sample C Male 66.7
Sample D Male 41.7
Superior colliculi
nTPM: 52.6
Samples: 4

Max nTPM: 66.4
Min nTPM: 30.2
Sample A Female 66.4
Sample B Female 30.2
Sample C Male 51.6
Sample D Male 62.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 173.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 173.9
Samples: 4

Max nTPM: 179.3
Min nTPM: 167.6
Sample A Male 179.3
Sample B Male 175.7
Sample C Female 167.6
Sample D Female 173.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.4
71381133 Antisense, RP_050510_03_F10, Mouse strain C57BL/6J (56 days, male) 15.4

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