MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.7 nTPM
HPA Brain:100.5 nTPM
GTEx:65.7 nTPM
FANTOM5:193.1 Scaled Tags Per Million
Pig:195.0 nTPM
Mouse:274.5 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 100.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.7
2411 Female, age 72, unknown 104.5
1870 Female, age 42, unknown 99.2
2019 Male, age 18, unknown 93.0
1833 Male, age 53, unknown 91.6
1827 Male, age 72, unknown 88.1
2219 Male, age 76, both hemispheres 86.4
1830 Male, age 51, unknown 85.1
2828 Female, age 72, unknown 79.9
2666 Male, age 74, left hemisphere 71.8
2586 Male, age 75, left hemisphere 57.2
Dorsal raphe nucleus
nTPM: 94.8
2750 Male, age 76, both hemispheres 112.2
2298 Female, age 72, unknown 101.8
2047 Male, age 72, unknown 89.1
1828 Male, age 53, unknown 86.8
2016 Female, age 72, unknown 84.1
Inferior colliculus
nTPM: 85.1
2097 Female, age 72, unknown 96.5
1848 Female, age 42, unknown 85.4
1890 Male, age 53, unknown 80.8
2849 Male, age 72, unknown 77.5
Median raphe nucleus
nTPM: 100.5
2220 Male, age 76, midline 100.5
Periaquaductal grey, anterior
nTPM: 86.6
2502 Female, age 75, unknown 93.2
1947 Male, age 18, unknown 89.7
1795 Male, age 51, unknown 76.9
Periaquaductal grey, dorsal
nTPM: 77.9
2850 Male, age 76, both hemispheres 79.3
1840 Male, age 53, unknown 78.7
2464 Female, age 72, unknown 78.7
1831 Male, age 72, unknown 75.1
Periaquaductal grey, lateral
nTPM: 80.8
2272 Male, age 74, both hemispheres 89.4
2053 Male, age 18, unknown 79.6
2140 Male, age 76, both hemispheres 73.4
Pretectal area
nTPM: 86.8
1816 Male, age 51, unknown 93.9
1817 Female, age 42, unknown 93.1
1815 Male, age 53, unknown 92.8
2273 Male, age 74, both hemispheres 92.1
2224 Female, age 72, unknown 88.7
2007 Male, age 72, unknown 88.0
1944 Female, age 72, unknown 87.4
2667 Female, age 75, unknown 83.6
2825 Male, age 18, unknown 81.7
2316 Male, age 76, right hemisphere 77.8
2407 Male, age 75, both hemispheres 76.2
Red nucleus
nTPM: 93.3
1821 Female, age 72, unknown 114.0
1865 Male, age 51, unknown 101.4
2725 Female, age 75, unknown 100.7
1904 Male, age 53, unknown 97.4
1954 Female, age 42, unknown 96.6
2503 Female, age 72, unknown 93.9
2823 Male, age 76, right hemisphere 92.9
2227 Male, age 72, unknown 91.4
2769 Male, age 72, unknown 90.2
2785 Male, age 18, unknown 87.2
2588 Male, age 74, left hemisphere 79.8
2584 Male, age 75, left hemisphere 74.7
Substantia nigra
nTPM: 98.1
2241 Male, age 72, unknown 123.8
1916 Female, age 42, unknown 118.2
1851 Male, age 51, unknown 106.8
1941 Male, age 53, unknown 102.0
2409 Female, age 72, unknown 99.6
1889 Female, age 72, unknown 97.7
2699 Male, age 18, unknown 94.1
2590 Female, age 75, unknown 87.0
2665 Male, age 74, both hemispheres 81.2
2583 Male, age 75, right hemisphere 70.6
Superior colliculus
nTPM: 84.8
2587 Male, age 74, left hemisphere 108.0
1895 Male, age 76, right hemisphere 91.5
1913 Female, age 42, unknown 91.1
2261 Male, age 18, unknown 86.5
1839 Male, age 51, unknown 83.1
2668 Female, age 75, unknown 82.9
2087 Female, age 72, unknown 81.7
1796 Male, age 53, unknown 81.2
1995 Male, age 72, unknown 77.9
2664 Male, age 75, both hemispheres 63.9
Ventral tegmental area
nTPM: 96.5
2218 Male, age 76, both hemispheres 106.6
2410 Female, age 72, unknown 105.6
2223 Female, age 72, unknown 99.1
1915 Female, age 42, unknown 96.6
2021 Male, age 53, unknown 87.6
1942 Male, age 51, unknown 83.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.7
Samples: 139

Max nTPM: 111.6
Min nTPM: 42.6
Std nTPM: 12.6
Median nTPM: 64.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 111.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 110.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 99.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 96.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 95.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 90.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 88.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 87.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 87.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 86.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 84.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 193.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 193.1
FF:10158-103A5 76 years, female 193.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 195.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 181.0
Samples: 4

Max nTPM: 219.9
Min nTPM: 138.9
Sample A Female 219.9
Sample B Female 138.9
Sample C Male 192.6
Sample D Male 172.6
Midbrain
nTPM: 195.0
Samples: 4

Max nTPM: 254.3
Min nTPM: 151.0
Sample A Female 254.3
Sample B Female 151.0
Sample C Male 207.2
Sample D Male 167.5
Periaqueductal gray
nTPM: 147.2
Samples: 3

Max nTPM: 157.2
Min nTPM: 137.2
Sample B Female 147.2
Sample C Male 157.2
Sample D Male 137.2
Superior colliculi
nTPM: 188.1
Samples: 4

Max nTPM: 221.2
Min nTPM: 140.1
Sample A Female 201.0
Sample B Female 140.1
Sample C Male 221.2
Sample D Male 190.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 274.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 274.5
Samples: 4

Max nTPM: 282.5
Min nTPM: 269.2
Sample A Male 269.2
Sample B Male 282.5
Sample C Female 273.0
Sample D Female 273.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
491 Antisense, RP_Baylor_102814, Mouse strain C57BL/6J (56 days, male) 4.3
492 Antisense, RP_Baylor_102814, Mouse strain C57BL/6J (56 days, male) 3.7

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