MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.8 nTPM
HPA Brain:53.6 nTPM
GTEx:33.8 nTPM
FANTOM5:126.5 Scaled Tags Per Million
Pig:83.5 nTPM
Mouse:33.8 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.1
2586 Male, age 75, left hemisphere 70.9
2019 Male, age 18, unknown 52.4
1833 Male, age 53, unknown 44.8
2828 Female, age 72, unknown 44.5
2666 Male, age 74, left hemisphere 43.1
1827 Male, age 72, unknown 42.8
1830 Male, age 51, unknown 41.2
1870 Female, age 42, unknown 39.8
2411 Female, age 72, unknown 38.4
2219 Male, age 76, both hemispheres 32.8
Dorsal raphe nucleus
nTPM: 50.2
2298 Female, age 72, unknown 57.2
2047 Male, age 72, unknown 55.6
1828 Male, age 53, unknown 47.8
2750 Male, age 76, both hemispheres 46.0
2016 Female, age 72, unknown 44.4
Inferior colliculus
nTPM: 40.4
2097 Female, age 72, unknown 43.0
1890 Male, age 53, unknown 42.7
1848 Female, age 42, unknown 39.9
2849 Male, age 72, unknown 35.9
Median raphe nucleus
nTPM: 53.6
2220 Male, age 76, midline 53.6
Periaquaductal grey, anterior
nTPM: 41.5
2502 Female, age 75, unknown 49.3
1795 Male, age 51, unknown 41.7
1947 Male, age 18, unknown 33.4
Periaquaductal grey, dorsal
nTPM: 46.0
2850 Male, age 76, both hemispheres 55.1
1840 Male, age 53, unknown 46.3
1831 Male, age 72, unknown 43.2
2464 Female, age 72, unknown 39.5
Periaquaductal grey, lateral
nTPM: 42.8
2140 Male, age 76, both hemispheres 49.4
2053 Male, age 18, unknown 41.5
2272 Male, age 74, both hemispheres 37.3
Pretectal area
nTPM: 45.6
1817 Female, age 42, unknown 58.9
1816 Male, age 51, unknown 56.6
1944 Female, age 72, unknown 55.6
1815 Male, age 53, unknown 53.2
2007 Male, age 72, unknown 49.6
2224 Female, age 72, unknown 43.1
2273 Male, age 74, both hemispheres 42.3
2667 Female, age 75, unknown 42.0
2825 Male, age 18, unknown 35.0
2407 Male, age 75, both hemispheres 34.9
2316 Male, age 76, right hemisphere 30.8
Red nucleus
nTPM: 41.9
1821 Female, age 72, unknown 46.9
2503 Female, age 72, unknown 45.1
2785 Male, age 18, unknown 45.1
2725 Female, age 75, unknown 44.9
1904 Male, age 53, unknown 44.6
1954 Female, age 42, unknown 43.7
1865 Male, age 51, unknown 42.8
2584 Male, age 75, left hemisphere 40.0
2588 Male, age 74, left hemisphere 38.6
2823 Male, age 76, right hemisphere 38.6
2227 Male, age 72, unknown 37.0
2769 Male, age 72, unknown 36.0
Substantia nigra
nTPM: 51.2
1916 Female, age 42, unknown 65.2
2241 Male, age 72, unknown 58.3
2409 Female, age 72, unknown 56.6
1851 Male, age 51, unknown 55.8
1889 Female, age 72, unknown 50.2
2665 Male, age 74, both hemispheres 49.9
2699 Male, age 18, unknown 49.6
2590 Female, age 75, unknown 43.5
2583 Male, age 75, right hemisphere 43.3
1941 Male, age 53, unknown 39.6
Superior colliculus
nTPM: 44.6
2261 Male, age 18, unknown 56.2
2664 Male, age 75, both hemispheres 52.4
1995 Male, age 72, unknown 49.4
2087 Female, age 72, unknown 46.9
1913 Female, age 42, unknown 46.4
1796 Male, age 53, unknown 43.4
2587 Male, age 74, left hemisphere 43.4
2668 Female, age 75, unknown 42.1
1839 Male, age 51, unknown 35.8
1895 Male, age 76, right hemisphere 30.2
Ventral tegmental area
nTPM: 46.0
2410 Female, age 72, unknown 52.4
2218 Male, age 76, both hemispheres 47.9
1915 Female, age 42, unknown 46.3
2021 Male, age 53, unknown 45.0
2223 Female, age 72, unknown 43.1
1942 Male, age 51, unknown 41.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.8
Samples: 139

Max nTPM: 101.6
Min nTPM: 2.9
Std nTPM: 15.3
Median nTPM: 30.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 101.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 80.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 78.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 77.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 75.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 63.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 63.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 63.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 61.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 59.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 58.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.5
FF:10158-103A5 76 years, female 126.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.5
Samples: 4

Max nTPM: 94.6
Min nTPM: 77.8
Sample A Female 80.3
Sample B Female 81.4
Sample C Male 77.8
Sample D Male 94.6
Midbrain
nTPM: 73.0
Samples: 4

Max nTPM: 118.5
Min nTPM: 48.2
Sample A Female 118.5
Sample B Female 70.0
Sample C Male 55.2
Sample D Male 48.2
Periaqueductal gray
nTPM: 65.7
Samples: 3

Max nTPM: 66.7
Min nTPM: 64.0
Sample B Female 66.5
Sample C Male 66.7
Sample D Male 64.0
Superior colliculi
nTPM: 74.6
Samples: 4

Max nTPM: 89.3
Min nTPM: 60.4
Sample A Female 76.2
Sample B Female 89.3
Sample C Male 60.4
Sample D Male 72.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 35.6
Min nTPM: 32.4
Sample A Male 32.4
Sample B Male 32.4
Sample C Female 34.8
Sample D Female 35.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
512530 Antisense, RP_040809_02_B01, Mouse strain C57BL/6J (56 days, male) 2.8

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