MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:66.6 nTPM
GTEx:19.2 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:282.3 nTPM
Allen mouse:19.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.6
2666 Male, age 74, left hemisphere 84.5
2586 Male, age 75, left hemisphere 82.4
1827 Male, age 72, unknown 68.9
2411 Female, age 72, unknown 67.7
2828 Female, age 72, unknown 63.8
2019 Male, age 18, unknown 63.1
2219 Male, age 76, both hemispheres 62.9
1870 Female, age 42, unknown 59.1
1833 Male, age 53, unknown 57.4
1830 Male, age 51, unknown 56.5
Dorsal raphe nucleus
nTPM: 62.3
2047 Male, age 72, unknown 70.4
2750 Male, age 76, both hemispheres 67.7
1828 Male, age 53, unknown 65.0
2298 Female, age 72, unknown 59.0
2016 Female, age 72, unknown 49.3
Inferior colliculus
nTPM: 58.1
1848 Female, age 42, unknown 64.3
2849 Male, age 72, unknown 60.2
1890 Male, age 53, unknown 55.6
2097 Female, age 72, unknown 52.3
Median raphe nucleus
nTPM: 65.8
2220 Male, age 76, midline 65.8
Periaquaductal grey, anterior
nTPM: 65.7
2502 Female, age 75, unknown 66.4
1947 Male, age 18, unknown 66.0
1795 Male, age 51, unknown 64.8
Periaquaductal grey, dorsal
nTPM: 54.5
1840 Male, age 53, unknown 63.7
2464 Female, age 72, unknown 58.2
1831 Male, age 72, unknown 53.0
2850 Male, age 76, both hemispheres 43.0
Periaquaductal grey, lateral
nTPM: 52.3
2053 Male, age 18, unknown 56.9
2140 Male, age 76, both hemispheres 51.3
2272 Male, age 74, both hemispheres 48.7
Pretectal area
nTPM: 61.3
1944 Female, age 72, unknown 71.3
2007 Male, age 72, unknown 69.4
1817 Female, age 42, unknown 66.7
1816 Male, age 51, unknown 66.6
2407 Male, age 75, both hemispheres 62.8
2667 Female, age 75, unknown 61.1
2825 Male, age 18, unknown 59.5
1815 Male, age 53, unknown 57.7
2224 Female, age 72, unknown 56.9
2316 Male, age 76, right hemisphere 56.4
2273 Male, age 74, both hemispheres 45.5
Red nucleus
nTPM: 64.2
2584 Male, age 75, left hemisphere 78.5
2588 Male, age 74, left hemisphere 75.8
2227 Male, age 72, unknown 69.9
2769 Male, age 72, unknown 69.6
1904 Male, age 53, unknown 64.1
2785 Male, age 18, unknown 63.5
2503 Female, age 72, unknown 61.5
2823 Male, age 76, right hemisphere 60.7
1865 Male, age 51, unknown 59.3
1821 Female, age 72, unknown 58.9
1954 Female, age 42, unknown 58.6
2725 Female, age 75, unknown 50.3
Substantia nigra
nTPM: 65.7
1916 Female, age 42, unknown 88.7
1941 Male, age 53, unknown 75.8
2583 Male, age 75, right hemisphere 72.4
1851 Male, age 51, unknown 70.9
2665 Male, age 74, both hemispheres 67.7
1889 Female, age 72, unknown 66.1
2699 Male, age 18, unknown 60.7
2409 Female, age 72, unknown 56.0
2590 Female, age 75, unknown 51.8
2241 Male, age 72, unknown 47.2
Superior colliculus
nTPM: 66.0
2668 Female, age 75, unknown 100.9
2087 Female, age 72, unknown 71.9
2261 Male, age 18, unknown 67.8
1839 Male, age 51, unknown 66.5
2664 Male, age 75, both hemispheres 66.4
1796 Male, age 53, unknown 65.9
1895 Male, age 76, right hemisphere 63.0
2587 Male, age 74, left hemisphere 54.0
1995 Male, age 72, unknown 53.6
1913 Female, age 42, unknown 49.9
Ventral tegmental area
nTPM: 64.6
1915 Female, age 42, unknown 70.7
2223 Female, age 72, unknown 68.3
1942 Male, age 51, unknown 66.7
2410 Female, age 72, unknown 65.0
2218 Male, age 76, both hemispheres 62.0
2021 Male, age 53, unknown 54.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 139

Max nTPM: 38.9
Min nTPM: 6.5
Std nTPM: 6.1
Median nTPM: 18.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 38.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 37.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 32.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 31.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 30.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 29.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 29.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 28.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 28.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.1
FF:10158-103A5 76 years, female 19.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 23.3
Min nTPM: 11.2
Sample A Female 23.3
Sample B Female 12.4
Sample C Male 18.8
Sample D Male 11.2
Midbrain
nTPM: 20.2
Samples: 4

Max nTPM: 28.8
Min nTPM: 11.6
Sample A Female 11.6
Sample B Female 17.4
Sample C Male 23.1
Sample D Male 28.8
Periaqueductal gray
nTPM: 18.9
Samples: 3

Max nTPM: 21.1
Min nTPM: 15.3
Sample B Female 20.4
Sample C Male 21.1
Sample D Male 15.3
Superior colliculi
nTPM: 25.5
Samples: 4

Max nTPM: 30.5
Min nTPM: 14.4
Sample A Female 30.5
Sample B Female 14.4
Sample C Male 29.5
Sample D Male 27.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 282.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 282.3
Samples: 4

Max nTPM: 286.3
Min nTPM: 276.7
Sample A Male 283.2
Sample B Male 283.0
Sample C Female 276.7
Sample D Female 286.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.0
385773 Antisense, RP_040625_01_D12, Mouse strain C57BL/6J (56 days, male) 19.0

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