HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:97.2 nTPM
HPA Brain:88.0 nTPM
GTEx:97.2 nTPM
FANTOM5:59.0 Scaled Tags Per Million
Pig:47.3 nTPM
Mouse:141.8 nTPM
Allen mouse:12.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043041Antibody HPA061143
Glial cells LowLow
Neuronal cells MediumMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 88.0
Sample id Sample description nTPM
Hippocampus
nTPM: 82.6
1898 Male, age 80, left hemisphere 104.4
1855 Male, age 76, left hemisphere 94.6
2148 Female, age 91, left hemisphere 87.2
2621 Female, age 67, right hemisphere 73.8
1911 Female, age 85, right hemisphere 69.4
2529 Female, age 94, left hemisphere 66.0
Dentate gyrus
nTPM: 86.4
1927 Female, age 91, both hemispheres 115.5
2530 Female, age 94, left hemisphere 103.1
2010 Male, age 76, both hemispheres 92.7
2246 Female, age 85, both hemispheres 77.7
2531 Female, age 67, both hemispheres 64.7
2528 Male, age 74, both hemispheres 64.6
Entorhinal gyrus
nTPM: 75.0
2613 Female, age 94, left hemisphere 91.9
1938 Female, age 85, left hemisphere 83.3
2764 Male, age 80, right hemisphere 78.1
1787 Male, age 76, left hemisphere 73.8
2686 Male, age 75, right hemisphere 63.7
2117 Female, age 91, right hemisphere 59.4
Hippocampus, CA1
nTPM: 88.0
2749 Male, age 80, left hemisphere 123.3
1873 Female, age 85, both hemispheres 111.1
2045 Male, age 76, both hemispheres 85.8
2527 Male, age 74, both hemispheres 61.9
2082 Female, age 91, right hemisphere 57.8
Hippocampus, CA2
nTPM: 84.3
1892 Male, age 76, both hemispheres 130.7
1963 Male, age 80, left hemisphere 105.6
2437 Female, age 94, left hemisphere 83.7
2249 Male, age 74, both hemispheres 66.8
1940 Female, age 85, left hemisphere 63.9
2113 Female, age 91, right hemisphere 55.1
Hippocampus, CA3
nTPM: 76.1
2137 Male, age 80, left hemisphere 86.3
1867 Male, age 76, both hemispheres 82.4
2620 Female, age 94, left hemisphere 77.1
2436 Male, age 74, both hemispheres 71.5
1891 Female, age 85, both hemispheres 70.6
2861 Female, age 67, both hemispheres 68.8
Parahippocampal cortex
nTPM: 68.3
1850 Male, age 80, both hemispheres 80.4
1990 Female, age 91, right hemisphere 76.1
2245 Female, age 91, both hemispheres 75.1
1933 Female, age 85, both hemispheres 72.8
2532 Female, age 72, left hemisphere 72.7
2622 Female, age 67, right hemisphere 63.9
2018 Male, age 76, both hemispheres 62.3
2692 Male, age 74, both hemispheres 61.4
2250 Female, age 67, right hemisphere 61.1
2693 Female, age 94, both hemispheres 57.0
Perirhinal gyrus
nTPM: 76.1
1847 Female, age 91, left hemisphere 98.2
1794 Male, age 80, right hemisphere 79.6
1841 Female, age 85, right hemisphere 75.7
2848 Male, age 76, right hemisphere 64.9
2521 Female, age 94, right hemisphere 62.3
Subiculum
nTPM: 70.0
1901 Male, age 80, both hemispheres 79.4
1977 Female, age 85, both hemispheres 77.0
2438 Female, age 94, left hemisphere 74.6
2042 Male, age 76, both hemispheres 70.6
2619 Male, age 74, both hemispheres 59.9
2729 Female, age 91, right hemisphere 58.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 97.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 97.2
Samples: 197

Max nTPM: 249.8
Min nTPM: 32.1
Std nTPM: 34.0
Median nTPM: 88.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 249.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 237.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 187.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 183.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 180.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 179.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 178.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 165.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 160.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 160.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 160.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 59.0
FF:10169-103B7 60 years, female 71.6
FF:10153-102I9 76 years, female 46.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 47.3
Pig sample Sample description nTPM
Subiculum
nTPM: 41.7
Samples: 4

Max nTPM: 48.9
Min nTPM: 36.9
Sample A Female 48.9
Sample B Female 39.6
Sample C Male 41.5
Sample D Male 36.9
Dorsal hippocampus
nTPM: 47.3
Samples: 4

Max nTPM: 58.3
Min nTPM: 40.4
Sample A Female 58.3
Sample B Female 45.4
Sample C Male 44.9
Sample D Male 40.4
Entorhinal cortex
nTPM: 42.6
Samples: 4

Max nTPM: 46.7
Min nTPM: 38.3
Sample A Female 44.6
Sample B Female 46.7
Sample C Male 38.3
Sample D Male 40.9
Ventral hippocampus
nTPM: 45.6
Samples: 4

Max nTPM: 53.1
Min nTPM: 35.7
Sample A Female 44.2
Sample B Female 35.7
Sample C Male 53.1
Sample D Male 49.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 141.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 121.0
Samples: 4

Max nTPM: 129.8
Min nTPM: 112.5
Sample A Male 122.7
Sample B Male 119.1
Sample C Female 129.8
Sample D Female 112.5
Hippocampal formation
nTPM: 141.8
Samples: 4

Max nTPM: 150.5
Min nTPM: 129.2
Sample A Male 150.5
Sample B Male 129.2
Sample C Female 149.1
Sample D Female 138.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.1
532605 Antisense, RP_040810_02_E03, Mouse strain C57BL/6J (56 days, male) 12.1

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