MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:127.4 nTPM
HPA Brain:108.4 nTPM
GTEx:127.4 nTPM
FANTOM5:62.7 Scaled Tags Per Million
Pig:73.8 nTPM
Mouse:40.1 nTPM
Allen mouse:7.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 108.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.4
2666 Male, age 74, left hemisphere 116.0
2019 Male, age 18, unknown 105.3
2828 Female, age 72, unknown 95.1
2586 Male, age 75, left hemisphere 94.3
1833 Male, age 53, unknown 93.5
2219 Male, age 76, both hemispheres 85.5
1830 Male, age 51, unknown 84.1
2411 Female, age 72, unknown 84.1
1827 Male, age 72, unknown 83.5
1870 Female, age 42, unknown 82.5
Dorsal raphe nucleus
nTPM: 81.0
2047 Male, age 72, unknown 90.0
1828 Male, age 53, unknown 85.9
2016 Female, age 72, unknown 80.9
2750 Male, age 76, both hemispheres 78.2
2298 Female, age 72, unknown 69.9
Inferior colliculus
nTPM: 88.0
2849 Male, age 72, unknown 94.9
1848 Female, age 42, unknown 89.4
2097 Female, age 72, unknown 84.2
1890 Male, age 53, unknown 83.4
Median raphe nucleus
nTPM: 65.6
2220 Male, age 76, midline 65.6
Periaquaductal grey, anterior
nTPM: 87.1
2502 Female, age 75, unknown 92.5
1947 Male, age 18, unknown 88.6
1795 Male, age 51, unknown 80.1
Periaquaductal grey, dorsal
nTPM: 73.0
2464 Female, age 72, unknown 79.6
1831 Male, age 72, unknown 79.2
2850 Male, age 76, both hemispheres 67.5
1840 Male, age 53, unknown 65.7
Periaquaductal grey, lateral
nTPM: 67.5
2140 Male, age 76, both hemispheres 70.9
2053 Male, age 18, unknown 68.9
2272 Male, age 74, both hemispheres 62.7
Pretectal area
nTPM: 74.2
1817 Female, age 42, unknown 105.4
2007 Male, age 72, unknown 101.2
1944 Female, age 72, unknown 82.5
1815 Male, age 53, unknown 80.5
1816 Male, age 51, unknown 80.2
2316 Male, age 76, right hemisphere 76.1
2825 Male, age 18, unknown 69.7
2667 Female, age 75, unknown 61.5
2224 Female, age 72, unknown 59.8
2407 Male, age 75, both hemispheres 52.4
2273 Male, age 74, both hemispheres 46.2
Red nucleus
nTPM: 108.4
2588 Male, age 74, left hemisphere 155.6
1954 Female, age 42, unknown 114.6
2725 Female, age 75, unknown 113.4
2769 Male, age 72, unknown 112.0
1904 Male, age 53, unknown 109.1
2503 Female, age 72, unknown 106.3
1821 Female, age 72, unknown 105.5
2785 Male, age 18, unknown 102.4
2227 Male, age 72, unknown 101.0
1865 Male, age 51, unknown 98.5
2823 Male, age 76, right hemisphere 96.1
2584 Male, age 75, left hemisphere 86.3
Substantia nigra
nTPM: 78.7
2665 Male, age 74, both hemispheres 129.1
1889 Female, age 72, unknown 87.9
1941 Male, age 53, unknown 84.9
1916 Female, age 42, unknown 80.9
1851 Male, age 51, unknown 78.4
2699 Male, age 18, unknown 71.7
2590 Female, age 75, unknown 68.6
2583 Male, age 75, right hemisphere 68.0
2409 Female, age 72, unknown 62.4
2241 Male, age 72, unknown 55.5
Superior colliculus
nTPM: 78.5
2587 Male, age 74, left hemisphere 92.7
2668 Female, age 75, unknown 90.5
1895 Male, age 76, right hemisphere 90.3
1839 Male, age 51, unknown 85.8
2087 Female, age 72, unknown 81.1
2261 Male, age 18, unknown 75.5
1796 Male, age 53, unknown 73.6
2664 Male, age 75, both hemispheres 67.5
1995 Male, age 72, unknown 65.3
1913 Female, age 42, unknown 62.8
Ventral tegmental area
nTPM: 74.3
2410 Female, age 72, unknown 80.8
1915 Female, age 42, unknown 80.7
1942 Male, age 51, unknown 76.4
2218 Male, age 76, both hemispheres 73.7
2223 Female, age 72, unknown 67.5
2021 Male, age 53, unknown 66.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 127.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 127.4
Samples: 139

Max nTPM: 414.9
Min nTPM: 40.3
Std nTPM: 63.9
Median nTPM: 110.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 414.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 395.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 331.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 304.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 292.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 275.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 271.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 237.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 226.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 220.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 218.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.7
FF:10158-103A5 76 years, female 62.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.0
Samples: 4

Max nTPM: 62.8
Min nTPM: 47.3
Sample A Female 62.8
Sample B Female 57.0
Sample C Male 48.7
Sample D Male 47.3
Midbrain
nTPM: 55.2
Samples: 4

Max nTPM: 66.1
Min nTPM: 42.6
Sample A Female 49.6
Sample B Female 42.6
Sample C Male 66.1
Sample D Male 62.5
Periaqueductal gray
nTPM: 36.8
Samples: 3

Max nTPM: 39.1
Min nTPM: 32.9
Sample B Female 38.5
Sample C Male 39.1
Sample D Male 32.9
Superior colliculi
nTPM: 73.7
Samples: 4

Max nTPM: 79.6
Min nTPM: 71.6
Sample A Female 79.6
Sample B Female 72.0
Sample C Male 71.7
Sample D Male 71.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.1
Samples: 4

Max nTPM: 43.6
Min nTPM: 37.3
Sample A Male 37.9
Sample B Male 37.3
Sample C Female 41.6
Sample D Female 43.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
74657980 Antisense, RP_051121_03_D11, Mouse strain C57BL/6J (56 days, male) 7.2
73573187 Antisense, RP_051121_03_D11, Mouse strain C57BL/6J (56 days, male) 5.0

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