HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:77.5 nTPM
HPA Brain:74.9 nTPM
GTEx:77.5 nTPM
FANTOM5:277.2 Scaled Tags Per Million
Pig:69.9 nTPM
Mouse:100.9 nTPM
Allen mouse:2.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040098Antibody CAB033576
Glial cells LowLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 74.9
Sample id Sample description nTPM
Hippocampus
nTPM: 61.6
1898 Male, age 80, left hemisphere 82.1
1855 Male, age 76, left hemisphere 62.5
2529 Female, age 94, left hemisphere 62.4
2621 Female, age 67, right hemisphere 58.8
1911 Female, age 85, right hemisphere 57.0
2148 Female, age 91, left hemisphere 46.5
Dentate gyrus
nTPM: 62.0
2528 Male, age 74, both hemispheres 74.2
1927 Female, age 91, both hemispheres 73.8
2010 Male, age 76, both hemispheres 72.4
2246 Female, age 85, both hemispheres 56.1
2530 Female, age 94, left hemisphere 54.7
2531 Female, age 67, both hemispheres 41.1
Entorhinal gyrus
nTPM: 57.1
1938 Female, age 85, left hemisphere 66.1
2764 Male, age 80, right hemisphere 63.0
1787 Male, age 76, left hemisphere 61.5
2117 Female, age 91, right hemisphere 60.0
2613 Female, age 94, left hemisphere 52.0
2686 Male, age 75, right hemisphere 40.2
Hippocampus, CA1
nTPM: 71.9
2749 Male, age 80, left hemisphere 100.4
2527 Male, age 74, both hemispheres 79.8
1873 Female, age 85, both hemispheres 74.7
2045 Male, age 76, both hemispheres 55.1
2082 Female, age 91, right hemisphere 49.3
Hippocampus, CA2
nTPM: 70.2
1892 Male, age 76, both hemispheres 94.2
2249 Male, age 74, both hemispheres 89.6
1963 Male, age 80, left hemisphere 76.3
1940 Female, age 85, left hemisphere 58.1
2437 Female, age 94, left hemisphere 52.0
2113 Female, age 91, right hemisphere 50.8
Hippocampus, CA3
nTPM: 67.9
2436 Male, age 74, both hemispheres 91.3
1867 Male, age 76, both hemispheres 85.5
2137 Male, age 80, left hemisphere 71.8
1891 Female, age 85, both hemispheres 67.6
2620 Female, age 94, left hemisphere 55.7
2861 Female, age 67, both hemispheres 35.6
Parahippocampal cortex
nTPM: 61.5
1850 Male, age 80, both hemispheres 80.6
1990 Female, age 91, right hemisphere 72.3
2250 Female, age 67, right hemisphere 71.2
1933 Female, age 85, both hemispheres 65.1
2245 Female, age 91, both hemispheres 61.4
2018 Male, age 76, both hemispheres 58.7
2693 Female, age 94, both hemispheres 57.9
2532 Female, age 72, left hemisphere 57.3
2692 Male, age 74, both hemispheres 51.6
2622 Female, age 67, right hemisphere 38.9
Perirhinal gyrus
nTPM: 74.9
1847 Female, age 91, left hemisphere 88.3
1841 Female, age 85, right hemisphere 79.2
1794 Male, age 80, right hemisphere 73.9
2521 Female, age 94, right hemisphere 72.6
2848 Male, age 76, right hemisphere 60.7
Subiculum
nTPM: 61.5
1901 Male, age 80, both hemispheres 69.7
1977 Female, age 85, both hemispheres 66.8
2438 Female, age 94, left hemisphere 66.2
2619 Male, age 74, both hemispheres 58.1
2042 Male, age 76, both hemispheres 56.7
2729 Female, age 91, right hemisphere 51.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 77.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 77.5
Samples: 197

Max nTPM: 148.2
Min nTPM: 33.9
Std nTPM: 19.2
Median nTPM: 77.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 148.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 141.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 130.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 125.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 124.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 117.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 116.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 115.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 114.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 113.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 110.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 277.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 277.2
FF:10169-103B7 60 years, female 369.7
FF:10153-102I9 76 years, female 184.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 69.9
Pig sample Sample description nTPM
Subiculum
nTPM: 63.3
Samples: 4

Max nTPM: 77.7
Min nTPM: 53.6
Sample A Female 77.7
Sample B Female 62.1
Sample C Male 59.6
Sample D Male 53.6
Dorsal hippocampus
nTPM: 69.9
Samples: 4

Max nTPM: 90.6
Min nTPM: 52.7
Sample A Female 90.6
Sample B Female 74.4
Sample C Male 61.8
Sample D Male 52.7
Entorhinal cortex
nTPM: 60.1
Samples: 4

Max nTPM: 71.2
Min nTPM: 46.4
Sample A Female 65.6
Sample B Female 71.2
Sample C Male 57.3
Sample D Male 46.4
Ventral hippocampus
nTPM: 66.2
Samples: 4

Max nTPM: 82.3
Min nTPM: 49.3
Sample A Female 64.9
Sample B Female 49.3
Sample C Male 68.4
Sample D Male 82.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 100.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 100.9
Samples: 4

Max nTPM: 105.4
Min nTPM: 97.2
Sample A Male 100.9
Sample B Male 97.2
Sample C Female 105.4
Sample D Female 100.1
Hippocampal formation
nTPM: 96.8
Samples: 4

Max nTPM: 107.6
Min nTPM: 89.1
Sample A Male 107.6
Sample B Male 89.1
Sample C Female 91.2
Sample D Female 99.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.3
79539640 Antisense, RP_071018_01_B11, Mouse strain C57BL/6J (56 days, male) 2.3

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