HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:43.5 nTPM
HPA Brain:175.8 nTPM
GTEx:43.5 nTPM
FANTOM5:161.4 Scaled Tags Per Million
Pig:204.8 nTPM
Mouse:182.4 nTPM
Allen mouse:9.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029632Antibody HPA029633Antibody CAB009745
Glial cells LowNot detectedNot detected
Neuronal cells HighNot detectedLow







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 175.8
Sample id Sample description nTPM
Hippocampus
nTPM: 118.0
1898 Male, age 80, left hemisphere 176.2
1855 Male, age 76, left hemisphere 143.5
2621 Female, age 67, right hemisphere 121.4
2148 Female, age 91, left hemisphere 118.0
1911 Female, age 85, right hemisphere 80.0
2529 Female, age 94, left hemisphere 68.8
Dentate gyrus
nTPM: 124.8
1927 Female, age 91, both hemispheres 167.6
2010 Male, age 76, both hemispheres 133.0
2528 Male, age 74, both hemispheres 118.7
2531 Female, age 67, both hemispheres 115.7
2246 Female, age 85, both hemispheres 114.5
2530 Female, age 94, left hemisphere 99.5
Entorhinal gyrus
nTPM: 128.2
2764 Male, age 80, right hemisphere 152.8
2613 Female, age 94, left hemisphere 147.9
1938 Female, age 85, left hemisphere 144.8
1787 Male, age 76, left hemisphere 124.4
2686 Male, age 75, right hemisphere 119.8
2117 Female, age 91, right hemisphere 79.6
Hippocampus, CA1
nTPM: 134.1
2749 Male, age 80, left hemisphere 183.7
1873 Female, age 85, both hemispheres 151.9
2045 Male, age 76, both hemispheres 129.9
2527 Male, age 74, both hemispheres 117.0
2082 Female, age 91, right hemisphere 87.9
Hippocampus, CA2
nTPM: 120.9
1892 Male, age 76, both hemispheres 176.3
1963 Male, age 80, left hemisphere 165.4
2437 Female, age 94, left hemisphere 100.9
1940 Female, age 85, left hemisphere 98.1
2249 Male, age 74, both hemispheres 97.6
2113 Female, age 91, right hemisphere 86.8
Hippocampus, CA3
nTPM: 116.9
2620 Female, age 94, left hemisphere 157.4
2861 Female, age 67, both hemispheres 121.1
2436 Male, age 74, both hemispheres 112.8
2137 Male, age 80, left hemisphere 110.4
1867 Male, age 76, both hemispheres 105.7
1891 Female, age 85, both hemispheres 93.8
Parahippocampal cortex
nTPM: 137.5
1850 Male, age 80, both hemispheres 185.6
2693 Female, age 94, both hemispheres 176.2
1933 Female, age 85, both hemispheres 147.4
1990 Female, age 91, right hemisphere 144.8
2245 Female, age 91, both hemispheres 142.1
2250 Female, age 67, right hemisphere 139.5
2532 Female, age 72, left hemisphere 127.1
2622 Female, age 67, right hemisphere 116.1
2018 Male, age 76, both hemispheres 102.7
2692 Male, age 74, both hemispheres 93.5
Perirhinal gyrus
nTPM: 175.8
1847 Female, age 91, left hemisphere 220.0
1794 Male, age 80, right hemisphere 187.7
2521 Female, age 94, right hemisphere 164.2
1841 Female, age 85, right hemisphere 160.0
2848 Male, age 76, right hemisphere 147.2
Subiculum
nTPM: 93.8
1977 Female, age 85, both hemispheres 126.9
2619 Male, age 74, both hemispheres 99.2
1901 Male, age 80, both hemispheres 97.0
2729 Female, age 91, right hemisphere 94.8
2438 Female, age 94, left hemisphere 88.3
2042 Male, age 76, both hemispheres 56.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.5
Samples: 197

Max nTPM: 160.5
Min nTPM: 2.7
Std nTPM: 29.8
Median nTPM: 36.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 160.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 121.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 118.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 118.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 117.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 112.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 109.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 106.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 105.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 102.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 100.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 161.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 161.4
FF:10169-103B7 60 years, female 219.1
FF:10153-102I9 76 years, female 103.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 204.8
Pig sample Sample description nTPM
Subiculum
nTPM: 175.2
Samples: 4

Max nTPM: 221.8
Min nTPM: 150.4
Sample A Female 221.8
Sample B Female 150.4
Sample C Male 164.2
Sample D Male 164.3
Dorsal hippocampus
nTPM: 195.7
Samples: 4

Max nTPM: 246.7
Min nTPM: 137.2
Sample A Female 246.7
Sample B Female 220.9
Sample C Male 137.2
Sample D Male 178.1
Entorhinal cortex
nTPM: 198.3
Samples: 4

Max nTPM: 218.4
Min nTPM: 186.1
Sample A Female 218.4
Sample B Female 194.0
Sample C Male 194.5
Sample D Male 186.1
Ventral hippocampus
nTPM: 204.8
Samples: 4

Max nTPM: 252.7
Min nTPM: 145.9
Sample A Female 252.7
Sample B Female 145.9
Sample C Male 245.1
Sample D Male 175.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 182.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 182.5
Samples: 4

Max nTPM: 220.8
Min nTPM: 165.3
Sample A Male 165.3
Sample B Male 175.5
Sample C Female 168.2
Sample D Female 220.8
Hippocampal formation
nTPM: 174.9
Samples: 4

Max nTPM: 197.1
Min nTPM: 153.2
Sample A Male 153.2
Sample B Male 188.0
Sample C Female 197.1
Sample D Female 161.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.8
984 Antisense, RP_040227_01_05, Mouse strain C57BL/6J (56 days, male) 9.8
985 Antisense, RP_040227_01_05, Mouse strain C57BL/6J (56 days, male) 5.7

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