MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:223.8 nTPM
HPA Brain:159.3 nTPM
GTEx:223.8 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:194.0 nTPM
Mouse:70.4 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 159.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.3
1870 Female, age 42, unknown 159.7
2828 Female, age 72, unknown 157.2
2666 Male, age 74, left hemisphere 149.8
1830 Male, age 51, unknown 134.2
2019 Male, age 18, unknown 131.9
1833 Male, age 53, unknown 131.2
2219 Male, age 76, both hemispheres 129.3
1827 Male, age 72, unknown 114.6
2586 Male, age 75, left hemisphere 113.1
2411 Female, age 72, unknown 102.2
Dorsal raphe nucleus
nTPM: 124.6
2016 Female, age 72, unknown 146.1
2750 Male, age 76, both hemispheres 139.7
1828 Male, age 53, unknown 120.9
2298 Female, age 72, unknown 108.3
2047 Male, age 72, unknown 108.1
Inferior colliculus
nTPM: 120.2
1890 Male, age 53, unknown 130.6
2849 Male, age 72, unknown 129.7
1848 Female, age 42, unknown 119.5
2097 Female, age 72, unknown 101.1
Median raphe nucleus
nTPM: 127.3
2220 Male, age 76, midline 127.3
Periaquaductal grey, anterior
nTPM: 118.2
2502 Female, age 75, unknown 129.1
1795 Male, age 51, unknown 117.1
1947 Male, age 18, unknown 108.5
Periaquaductal grey, dorsal
nTPM: 121.3
2850 Male, age 76, both hemispheres 146.2
1831 Male, age 72, unknown 134.5
1840 Male, age 53, unknown 106.6
2464 Female, age 72, unknown 98.0
Periaquaductal grey, lateral
nTPM: 126.3
2272 Male, age 74, both hemispheres 131.5
2053 Male, age 18, unknown 131.3
2140 Male, age 76, both hemispheres 116.2
Pretectal area
nTPM: 125.5
1817 Female, age 42, unknown 139.4
1815 Male, age 53, unknown 138.5
2273 Male, age 74, both hemispheres 130.8
2316 Male, age 76, right hemisphere 130.5
2407 Male, age 75, both hemispheres 126.0
2667 Female, age 75, unknown 125.7
2224 Female, age 72, unknown 123.1
2007 Male, age 72, unknown 122.3
2825 Male, age 18, unknown 120.8
1944 Female, age 72, unknown 118.8
1816 Male, age 51, unknown 105.0
Red nucleus
nTPM: 159.3
2503 Female, age 72, unknown 186.5
1865 Male, age 51, unknown 186.3
2725 Female, age 75, unknown 176.9
1904 Male, age 53, unknown 171.2
2769 Male, age 72, unknown 161.7
2227 Male, age 72, unknown 161.6
1821 Female, age 72, unknown 158.3
1954 Female, age 42, unknown 156.4
2785 Male, age 18, unknown 149.3
2823 Male, age 76, right hemisphere 149.1
2584 Male, age 75, left hemisphere 129.2
2588 Male, age 74, left hemisphere 125.6
Substantia nigra
nTPM: 135.9
2699 Male, age 18, unknown 195.7
2665 Male, age 74, both hemispheres 159.3
1851 Male, age 51, unknown 149.8
1916 Female, age 42, unknown 145.1
1889 Female, age 72, unknown 130.9
1941 Male, age 53, unknown 123.6
2590 Female, age 75, unknown 122.4
2583 Male, age 75, right hemisphere 120.2
2409 Female, age 72, unknown 111.7
2241 Male, age 72, unknown 100.1
Superior colliculus
nTPM: 130.4
1913 Female, age 42, unknown 184.7
1995 Male, age 72, unknown 178.8
2587 Male, age 74, left hemisphere 157.9
1839 Male, age 51, unknown 120.9
1895 Male, age 76, right hemisphere 120.6
1796 Male, age 53, unknown 115.6
2668 Female, age 75, unknown 113.0
2664 Male, age 75, both hemispheres 111.2
2087 Female, age 72, unknown 102.3
2261 Male, age 18, unknown 98.9
Ventral tegmental area
nTPM: 133.6
2218 Male, age 76, both hemispheres 141.2
1915 Female, age 42, unknown 140.2
2021 Male, age 53, unknown 139.3
2223 Female, age 72, unknown 137.4
1942 Male, age 51, unknown 124.7
2410 Female, age 72, unknown 119.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 223.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 223.8
Samples: 139

Max nTPM: 391.3
Min nTPM: 73.1
Std nTPM: 64.8
Median nTPM: 215.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 391.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 384.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 365.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 362.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 352.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 352.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 347.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 345.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 340.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 331.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 321.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 194.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 194.0
Samples: 4

Max nTPM: 230.9
Min nTPM: 158.8
Sample A Female 171.2
Sample B Female 215.1
Sample C Male 158.8
Sample D Male 230.9
Midbrain
nTPM: 189.5
Samples: 4

Max nTPM: 311.6
Min nTPM: 122.4
Sample A Female 311.6
Sample B Female 191.5
Sample C Male 132.3
Sample D Male 122.4
Periaqueductal gray
nTPM: 162.9
Samples: 3

Max nTPM: 169.4
Min nTPM: 159.4
Sample B Female 169.4
Sample C Male 160.0
Sample D Male 159.4
Superior colliculi
nTPM: 192.8
Samples: 4

Max nTPM: 235.0
Min nTPM: 167.1
Sample A Female 185.8
Sample B Female 235.0
Sample C Male 167.1
Sample D Male 183.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.4
Samples: 4

Max nTPM: 73.3
Min nTPM: 68.7
Sample A Male 68.7
Sample B Male 69.2
Sample C Female 73.3
Sample D Female 70.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
743 Antisense, RP_Baylor_103125, Mouse strain C57BL/6J (56 days, male) 0.9
68341460 Antisense, RP_041207_01_F02, Mouse strain C57BL/6J (56 days, male) 0.1

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