MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.9 nTPM
HPA Brain:89.3 nTPM
GTEx:20.9 nTPM
FANTOM5:291.3 Scaled Tags Per Million
Pig:74.5 nTPM
Mouse:14.8 nTPM
Allen mouse:7.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.2
2019 Male, age 18, unknown 88.8
2411 Female, age 72, unknown 83.6
1830 Male, age 51, unknown 83.2
1833 Male, age 53, unknown 82.2
1870 Female, age 42, unknown 75.4
2586 Male, age 75, left hemisphere 66.7
2219 Male, age 76, both hemispheres 66.3
2666 Male, age 74, left hemisphere 64.0
2828 Female, age 72, unknown 58.9
1827 Male, age 72, unknown 52.9
Dorsal raphe nucleus
nTPM: 54.0
2750 Male, age 76, both hemispheres 83.5
1828 Male, age 53, unknown 54.6
2016 Female, age 72, unknown 53.0
2047 Male, age 72, unknown 41.3
2298 Female, age 72, unknown 37.6
Inferior colliculus
nTPM: 55.2
1890 Male, age 53, unknown 58.1
1848 Female, age 42, unknown 56.3
2849 Male, age 72, unknown 54.0
2097 Female, age 72, unknown 52.5
Median raphe nucleus
nTPM: 48.7
2220 Male, age 76, midline 48.7
Periaquaductal grey, anterior
nTPM: 47.0
2502 Female, age 75, unknown 56.0
1947 Male, age 18, unknown 47.1
1795 Male, age 51, unknown 37.9
Periaquaductal grey, dorsal
nTPM: 42.0
2464 Female, age 72, unknown 60.1
1831 Male, age 72, unknown 41.7
1840 Male, age 53, unknown 33.8
2850 Male, age 76, both hemispheres 32.4
Periaquaductal grey, lateral
nTPM: 39.4
2053 Male, age 18, unknown 45.5
2272 Male, age 74, both hemispheres 41.7
2140 Male, age 76, both hemispheres 31.0
Pretectal area
nTPM: 55.2
1815 Male, age 53, unknown 69.8
1817 Female, age 42, unknown 67.2
2007 Male, age 72, unknown 67.0
2316 Male, age 76, right hemisphere 61.1
1944 Female, age 72, unknown 57.8
2407 Male, age 75, both hemispheres 56.2
1816 Male, age 51, unknown 50.7
2825 Male, age 18, unknown 47.7
2667 Female, age 75, unknown 47.4
2224 Female, age 72, unknown 40.9
2273 Male, age 74, both hemispheres 40.8
Red nucleus
nTPM: 89.3
1821 Female, age 72, unknown 106.8
1865 Male, age 51, unknown 103.0
1904 Male, age 53, unknown 101.8
2823 Male, age 76, right hemisphere 93.5
2503 Female, age 72, unknown 93.4
2785 Male, age 18, unknown 90.5
1954 Female, age 42, unknown 89.8
2227 Male, age 72, unknown 87.7
2769 Male, age 72, unknown 86.6
2588 Male, age 74, left hemisphere 80.9
2725 Female, age 75, unknown 71.3
2584 Male, age 75, left hemisphere 66.6
Substantia nigra
nTPM: 65.3
2409 Female, age 72, unknown 79.9
2241 Male, age 72, unknown 74.8
1889 Female, age 72, unknown 68.5
1851 Male, age 51, unknown 67.8
2590 Female, age 75, unknown 66.5
2583 Male, age 75, right hemisphere 64.6
1941 Male, age 53, unknown 63.7
1916 Female, age 42, unknown 60.2
2699 Male, age 18, unknown 59.8
2665 Male, age 74, both hemispheres 47.3
Superior colliculus
nTPM: 62.7
1913 Female, age 42, unknown 76.8
1995 Male, age 72, unknown 75.5
1895 Male, age 76, right hemisphere 72.2
2668 Female, age 75, unknown 71.0
2587 Male, age 74, left hemisphere 67.8
1839 Male, age 51, unknown 63.4
2087 Female, age 72, unknown 54.0
2261 Male, age 18, unknown 50.3
2664 Male, age 75, both hemispheres 48.6
1796 Male, age 53, unknown 47.7
Ventral tegmental area
nTPM: 61.3
2410 Female, age 72, unknown 82.4
2223 Female, age 72, unknown 66.3
2218 Male, age 76, both hemispheres 58.0
1915 Female, age 42, unknown 56.3
1942 Male, age 51, unknown 54.0
2021 Male, age 53, unknown 50.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.9
Samples: 139

Max nTPM: 48.3
Min nTPM: 8.0
Std nTPM: 7.3
Median nTPM: 18.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 48.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 45.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 41.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 41.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 40.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 39.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 38.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 38.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 36.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 35.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 34.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 291.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 291.3
FF:10158-103A5 76 years, female 291.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.1
Samples: 4

Max nTPM: 95.0
Min nTPM: 54.4
Sample A Female 74.2
Sample B Female 54.4
Sample C Male 72.6
Sample D Male 95.0
Midbrain
nTPM: 74.5
Samples: 4

Max nTPM: 101.4
Min nTPM: 56.7
Sample A Female 101.4
Sample B Female 74.0
Sample C Male 66.0
Sample D Male 56.7
Periaqueductal gray
nTPM: 58.0
Samples: 3

Max nTPM: 67.9
Min nTPM: 52.5
Sample B Female 67.9
Sample C Male 52.5
Sample D Male 53.7
Superior colliculi
nTPM: 62.8
Samples: 4

Max nTPM: 74.4
Min nTPM: 36.1
Sample A Female 70.2
Sample B Female 36.1
Sample C Male 70.5
Sample D Male 74.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.8
Samples: 4

Max nTPM: 16.2
Min nTPM: 11.9
Sample A Male 11.9
Sample B Male 16.2
Sample C Female 16.0
Sample D Female 15.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
73606642 Antisense, RP_051130_01_C11, Mouse strain C57BL/6J (56 days, male) 7.2

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