MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.8 nTPM
HPA Brain:39.9 nTPM
GTEx:3.8 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:42.3 nTPM
Mouse:13.8 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.3
2019 Male, age 18, unknown 42.7
2586 Male, age 75, left hemisphere 41.9
2666 Male, age 74, left hemisphere 40.5
1827 Male, age 72, unknown 39.2
2411 Female, age 72, unknown 38.6
2828 Female, age 72, unknown 35.4
1870 Female, age 42, unknown 35.2
1833 Male, age 53, unknown 34.9
2219 Male, age 76, both hemispheres 34.8
1830 Male, age 51, unknown 30.1
Dorsal raphe nucleus
nTPM: 34.9
2298 Female, age 72, unknown 39.1
2047 Male, age 72, unknown 36.0
2750 Male, age 76, both hemispheres 34.6
2016 Female, age 72, unknown 33.5
1828 Male, age 53, unknown 31.2
Inferior colliculus
nTPM: 35.8
1848 Female, age 42, unknown 37.7
1890 Male, age 53, unknown 36.2
2097 Female, age 72, unknown 35.7
2849 Male, age 72, unknown 33.5
Median raphe nucleus
nTPM: 32.4
2220 Male, age 76, midline 32.4
Periaquaductal grey, anterior
nTPM: 37.9
1795 Male, age 51, unknown 39.2
2502 Female, age 75, unknown 37.9
1947 Male, age 18, unknown 36.7
Periaquaductal grey, dorsal
nTPM: 36.7
1840 Male, age 53, unknown 45.7
2464 Female, age 72, unknown 37.5
2850 Male, age 76, both hemispheres 33.0
1831 Male, age 72, unknown 30.6
Periaquaductal grey, lateral
nTPM: 35.5
2140 Male, age 76, both hemispheres 37.1
2053 Male, age 18, unknown 35.1
2272 Male, age 74, both hemispheres 34.2
Pretectal area
nTPM: 39.9
2007 Male, age 72, unknown 52.8
1816 Male, age 51, unknown 50.3
1944 Female, age 72, unknown 45.6
1817 Female, age 42, unknown 43.9
1815 Male, age 53, unknown 42.6
2224 Female, age 72, unknown 38.0
2273 Male, age 74, both hemispheres 36.2
2825 Male, age 18, unknown 34.1
2667 Female, age 75, unknown 33.1
2407 Male, age 75, both hemispheres 31.4
2316 Male, age 76, right hemisphere 30.4
Red nucleus
nTPM: 34.9
2785 Male, age 18, unknown 42.3
2584 Male, age 75, left hemisphere 41.3
2503 Female, age 72, unknown 40.6
2725 Female, age 75, unknown 40.4
2588 Male, age 74, left hemisphere 36.8
1821 Female, age 72, unknown 35.6
1865 Male, age 51, unknown 32.6
1904 Male, age 53, unknown 31.0
2227 Male, age 72, unknown 30.7
2769 Male, age 72, unknown 30.2
1954 Female, age 42, unknown 28.8
2823 Male, age 76, right hemisphere 28.5
Substantia nigra
nTPM: 38.4
2241 Male, age 72, unknown 45.9
1889 Female, age 72, unknown 42.0
1851 Male, age 51, unknown 40.5
1916 Female, age 42, unknown 40.5
2583 Male, age 75, right hemisphere 40.3
2590 Female, age 75, unknown 39.0
1941 Male, age 53, unknown 38.4
2665 Male, age 74, both hemispheres 37.0
2409 Female, age 72, unknown 34.1
2699 Male, age 18, unknown 26.4
Superior colliculus
nTPM: 37.0
2261 Male, age 18, unknown 45.1
2087 Female, age 72, unknown 39.9
1796 Male, age 53, unknown 39.4
1895 Male, age 76, right hemisphere 38.2
2587 Male, age 74, left hemisphere 38.0
1913 Female, age 42, unknown 36.7
2668 Female, age 75, unknown 36.5
1995 Male, age 72, unknown 33.6
1839 Male, age 51, unknown 32.7
2664 Male, age 75, both hemispheres 30.3
Ventral tegmental area
nTPM: 36.4
2410 Female, age 72, unknown 40.3
1942 Male, age 51, unknown 37.8
1915 Female, age 42, unknown 37.0
2218 Male, age 76, both hemispheres 36.0
2223 Female, age 72, unknown 35.3
2021 Male, age 53, unknown 31.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.8
Samples: 139

Max nTPM: 6.0
Min nTPM: 2.5
Std nTPM: 0.6
Median nTPM: 3.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 6.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 5.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 5.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 5.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 5.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 5.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 4.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 4.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 4.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 4.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 4.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.8
FF:10158-103A5 76 years, female 34.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.4
Samples: 4

Max nTPM: 46.0
Min nTPM: 32.7
Sample A Female 46.0
Sample B Female 41.4
Sample C Male 41.5
Sample D Male 32.7
Midbrain
nTPM: 42.3
Samples: 4

Max nTPM: 47.0
Min nTPM: 38.7
Sample A Female 40.8
Sample B Female 42.5
Sample C Male 47.0
Sample D Male 38.7
Periaqueductal gray
nTPM: 39.1
Samples: 3

Max nTPM: 41.1
Min nTPM: 37.6
Sample B Female 41.1
Sample C Male 38.5
Sample D Male 37.6
Superior colliculi
nTPM: 42.3
Samples: 4

Max nTPM: 52.7
Min nTPM: 37.3
Sample A Female 37.3
Sample B Female 39.7
Sample C Male 52.7
Sample D Male 39.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 15.8
Min nTPM: 10.7
Sample A Male 10.7
Sample B Male 15.8
Sample C Female 14.0
Sample D Female 14.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69407672 Antisense, RP_050414_02_B05, Mouse strain C57BL/6J (56 days, male) 0.9

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