MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA Brain:71.9 nTPM
GTEx:15.9 nTPM
FANTOM5:210.2 Scaled Tags Per Million
Pig:53.1 nTPM
Mouse:40.5 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.3
1870 Female, age 42, unknown 72.2
2411 Female, age 72, unknown 67.9
1827 Male, age 72, unknown 65.3
1833 Male, age 53, unknown 65.1
2219 Male, age 76, both hemispheres 64.8
2828 Female, age 72, unknown 64.1
1830 Male, age 51, unknown 63.6
2019 Male, age 18, unknown 62.2
2666 Male, age 74, left hemisphere 59.0
2586 Male, age 75, left hemisphere 58.5
Dorsal raphe nucleus
nTPM: 67.5
2016 Female, age 72, unknown 73.6
2298 Female, age 72, unknown 68.6
2750 Male, age 76, both hemispheres 66.8
1828 Male, age 53, unknown 65.7
2047 Male, age 72, unknown 62.8
Inferior colliculus
nTPM: 59.8
2849 Male, age 72, unknown 66.3
1848 Female, age 42, unknown 61.2
1890 Male, age 53, unknown 56.3
2097 Female, age 72, unknown 55.4
Median raphe nucleus
nTPM: 67.2
2220 Male, age 76, midline 67.2
Periaquaductal grey, anterior
nTPM: 71.9
2502 Female, age 75, unknown 78.0
1947 Male, age 18, unknown 75.2
1795 Male, age 51, unknown 62.4
Periaquaductal grey, dorsal
nTPM: 66.7
2850 Male, age 76, both hemispheres 75.3
1840 Male, age 53, unknown 66.9
2464 Female, age 72, unknown 65.5
1831 Male, age 72, unknown 59.3
Periaquaductal grey, lateral
nTPM: 64.2
2140 Male, age 76, both hemispheres 66.9
2272 Male, age 74, both hemispheres 66.2
2053 Male, age 18, unknown 59.4
Pretectal area
nTPM: 64.2
2667 Female, age 75, unknown 71.4
1815 Male, age 53, unknown 69.6
2224 Female, age 72, unknown 67.6
1816 Male, age 51, unknown 66.5
2273 Male, age 74, both hemispheres 64.5
2825 Male, age 18, unknown 62.9
1944 Female, age 72, unknown 62.7
1817 Female, age 42, unknown 62.1
2316 Male, age 76, right hemisphere 62.1
2007 Male, age 72, unknown 60.3
2407 Male, age 75, both hemispheres 57.0
Red nucleus
nTPM: 63.9
1821 Female, age 72, unknown 72.8
1865 Male, age 51, unknown 70.4
2503 Female, age 72, unknown 70.1
1904 Male, age 53, unknown 66.2
2725 Female, age 75, unknown 64.9
1954 Female, age 42, unknown 64.1
2227 Male, age 72, unknown 63.7
2769 Male, age 72, unknown 62.4
2785 Male, age 18, unknown 60.2
2584 Male, age 75, left hemisphere 59.8
2823 Male, age 76, right hemisphere 57.8
2588 Male, age 74, left hemisphere 54.7
Substantia nigra
nTPM: 71.8
1916 Female, age 42, unknown 82.2
2699 Male, age 18, unknown 81.8
2241 Male, age 72, unknown 80.6
2409 Female, age 72, unknown 79.9
1851 Male, age 51, unknown 76.6
1941 Male, age 53, unknown 72.8
1889 Female, age 72, unknown 64.4
2665 Male, age 74, both hemispheres 61.8
2590 Female, age 75, unknown 61.2
2583 Male, age 75, right hemisphere 56.8
Superior colliculus
nTPM: 66.0
1913 Female, age 42, unknown 76.1
2587 Male, age 74, left hemisphere 71.3
1796 Male, age 53, unknown 67.8
1995 Male, age 72, unknown 67.2
1839 Male, age 51, unknown 65.7
2261 Male, age 18, unknown 65.5
1895 Male, age 76, right hemisphere 64.1
2668 Female, age 75, unknown 61.9
2087 Female, age 72, unknown 60.2
2664 Male, age 75, both hemispheres 59.9
Ventral tegmental area
nTPM: 69.3
2410 Female, age 72, unknown 76.7
2218 Male, age 76, both hemispheres 74.9
1915 Female, age 42, unknown 70.4
2223 Female, age 72, unknown 66.9
1942 Male, age 51, unknown 65.0
2021 Male, age 53, unknown 62.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.9
Samples: 139

Max nTPM: 27.8
Min nTPM: 8.6
Std nTPM: 3.9
Median nTPM: 15.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 27.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 26.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 25.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 24.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 24.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 24.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 24.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 23.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 22.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 210.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 210.2
FF:10158-103A5 76 years, female 210.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.8
Samples: 4

Max nTPM: 54.9
Min nTPM: 37.1
Sample A Female 54.9
Sample B Female 37.1
Sample C Male 53.8
Sample D Male 45.2
Midbrain
nTPM: 53.1
Samples: 4

Max nTPM: 66.5
Min nTPM: 46.0
Sample A Female 51.0
Sample B Female 49.0
Sample C Male 66.5
Sample D Male 46.0
Periaqueductal gray
nTPM: 40.2
Samples: 3

Max nTPM: 42.1
Min nTPM: 39.1
Sample B Female 39.5
Sample C Male 42.1
Sample D Male 39.1
Superior colliculi
nTPM: 46.8
Samples: 4

Max nTPM: 61.8
Min nTPM: 28.1
Sample A Female 45.5
Sample B Female 28.1
Sample C Male 61.8
Sample D Male 51.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.5
Samples: 4

Max nTPM: 44.7
Min nTPM: 36.0
Sample A Male 36.0
Sample B Male 40.6
Sample C Female 44.7
Sample D Female 40.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
71610830 Antisense, RP_050927_01_H09, Mouse strain C57BL/6J (56 days, male) 10.0

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