MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.5 nTPM
HPA Brain:20.2 nTPM
GTEx:4.5 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Pig:17.6 nTPM
Mouse:13.8 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.7
1830 Male, age 51, unknown 21.3
1833 Male, age 53, unknown 19.4
1870 Female, age 42, unknown 19.3
2411 Female, age 72, unknown 19.0
2019 Male, age 18, unknown 17.4
1827 Male, age 72, unknown 17.0
2666 Male, age 74, left hemisphere 16.3
2586 Male, age 75, left hemisphere 16.2
2828 Female, age 72, unknown 15.8
2219 Male, age 76, both hemispheres 15.6
Dorsal raphe nucleus
nTPM: 17.5
2016 Female, age 72, unknown 20.3
1828 Male, age 53, unknown 18.6
2750 Male, age 76, both hemispheres 18.2
2047 Male, age 72, unknown 15.3
2298 Female, age 72, unknown 15.1
Inferior colliculus
nTPM: 17.2
1848 Female, age 42, unknown 18.0
1890 Male, age 53, unknown 17.7
2849 Male, age 72, unknown 17.2
2097 Female, age 72, unknown 16.0
Median raphe nucleus
nTPM: 16.8
2220 Male, age 76, midline 16.8
Periaquaductal grey, anterior
nTPM: 17.6
1947 Male, age 18, unknown 19.8
2502 Female, age 75, unknown 17.5
1795 Male, age 51, unknown 15.5
Periaquaductal grey, dorsal
nTPM: 16.8
2850 Male, age 76, both hemispheres 21.0
2464 Female, age 72, unknown 16.8
1831 Male, age 72, unknown 15.4
1840 Male, age 53, unknown 14.0
Periaquaductal grey, lateral
nTPM: 18.5
2140 Male, age 76, both hemispheres 20.0
2272 Male, age 74, both hemispheres 19.8
2053 Male, age 18, unknown 15.8
Pretectal area
nTPM: 16.8
1815 Male, age 53, unknown 18.5
2273 Male, age 74, both hemispheres 17.9
2316 Male, age 76, right hemisphere 17.7
2407 Male, age 75, both hemispheres 17.4
2667 Female, age 75, unknown 17.1
2825 Male, age 18, unknown 16.8
1817 Female, age 42, unknown 16.7
2007 Male, age 72, unknown 16.6
2224 Female, age 72, unknown 15.8
1816 Male, age 51, unknown 15.6
1944 Female, age 72, unknown 15.2
Red nucleus
nTPM: 20.2
1904 Male, age 53, unknown 22.7
2503 Female, age 72, unknown 22.4
2785 Male, age 18, unknown 22.4
1865 Male, age 51, unknown 21.8
1821 Female, age 72, unknown 20.9
2227 Male, age 72, unknown 20.6
2823 Male, age 76, right hemisphere 20.2
1954 Female, age 42, unknown 19.3
2769 Male, age 72, unknown 19.2
2725 Female, age 75, unknown 19.0
2588 Male, age 74, left hemisphere 18.1
2584 Male, age 75, left hemisphere 16.4
Substantia nigra
nTPM: 19.3
2241 Male, age 72, unknown 22.7
2583 Male, age 75, right hemisphere 21.2
2590 Female, age 75, unknown 20.6
2409 Female, age 72, unknown 19.7
2699 Male, age 18, unknown 19.6
1851 Male, age 51, unknown 19.2
1916 Female, age 42, unknown 19.0
1889 Female, age 72, unknown 17.9
1941 Male, age 53, unknown 17.2
2665 Male, age 74, both hemispheres 15.8
Superior colliculus
nTPM: 17.9
1913 Female, age 42, unknown 22.3
1995 Male, age 72, unknown 20.0
1895 Male, age 76, right hemisphere 18.1
1839 Male, age 51, unknown 18.0
2587 Male, age 74, left hemisphere 18.0
2087 Female, age 72, unknown 17.8
2668 Female, age 75, unknown 17.3
1796 Male, age 53, unknown 16.6
2261 Male, age 18, unknown 16.4
2664 Male, age 75, both hemispheres 14.5
Ventral tegmental area
nTPM: 17.0
2218 Male, age 76, both hemispheres 19.4
2410 Female, age 72, unknown 18.3
1915 Female, age 42, unknown 16.7
2223 Female, age 72, unknown 16.3
2021 Male, age 53, unknown 16.0
1942 Male, age 51, unknown 15.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.5
Samples: 139

Max nTPM: 13.5
Min nTPM: 2.6
Std nTPM: 1.3
Median nTPM: 4.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 13.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 8.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 8.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 7.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 7.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 6.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 6.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 6.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 6.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 6.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.3
FF:10158-103A5 76 years, female 19.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.8
Samples: 4

Max nTPM: 17.4
Min nTPM: 15.6
Sample A Female 17.0
Sample B Female 17.4
Sample C Male 15.6
Sample D Male 17.2
Midbrain
nTPM: 17.1
Samples: 4

Max nTPM: 19.0
Min nTPM: 15.4
Sample A Female 16.3
Sample B Female 19.0
Sample C Male 17.8
Sample D Male 15.4
Periaqueductal gray
nTPM: 16.0
Samples: 3

Max nTPM: 17.1
Min nTPM: 15.3
Sample B Female 17.1
Sample C Male 15.3
Sample D Male 15.5
Superior colliculi
nTPM: 17.6
Samples: 4

Max nTPM: 22.0
Min nTPM: 15.5
Sample A Female 15.9
Sample B Female 22.0
Sample C Male 17.1
Sample D Male 15.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 14.9
Min nTPM: 12.7
Sample A Male 12.7
Sample B Male 13.7
Sample C Female 14.0
Sample D Female 14.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69817444 Antisense, RP_050510_03_D06, Mouse strain C57BL/6J (56 days, male) 1.5

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