HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:23.8 nTPM
HPA Brain:19.9 nTPM
GTEx:23.8 nTPM
FANTOM5:31.4 Scaled Tags Per Million
Pig:55.5 nTPM
Mouse:50.2 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038773
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.9
Sample id Sample description nTPM
Hippocampus
nTPM: 17.0
1898 Male, age 80, left hemisphere 23.8
2529 Female, age 94, left hemisphere 16.5
2621 Female, age 67, right hemisphere 16.5
2148 Female, age 91, left hemisphere 16.1
1855 Male, age 76, left hemisphere 14.8
1911 Female, age 85, right hemisphere 14.3
Dentate gyrus
nTPM: 15.4
1927 Female, age 91, both hemispheres 18.7
2010 Male, age 76, both hemispheres 15.5
2530 Female, age 94, left hemisphere 15.5
2246 Female, age 85, both hemispheres 15.1
2528 Male, age 74, both hemispheres 14.6
2531 Female, age 67, both hemispheres 12.9
Entorhinal gyrus
nTPM: 15.1
1938 Female, age 85, left hemisphere 19.2
2764 Male, age 80, right hemisphere 16.3
2117 Female, age 91, right hemisphere 15.3
2686 Male, age 75, right hemisphere 15.2
1787 Male, age 76, left hemisphere 13.9
2613 Female, age 94, left hemisphere 10.8
Hippocampus, CA1
nTPM: 18.5
2749 Male, age 80, left hemisphere 26.1
2527 Male, age 74, both hemispheres 23.2
1873 Female, age 85, both hemispheres 17.0
2082 Female, age 91, right hemisphere 14.5
2045 Male, age 76, both hemispheres 11.6
Hippocampus, CA2
nTPM: 18.5
1892 Male, age 76, both hemispheres 22.6
1963 Male, age 80, left hemisphere 20.2
2249 Male, age 74, both hemispheres 20.2
2437 Female, age 94, left hemisphere 17.2
1940 Female, age 85, left hemisphere 16.1
2113 Female, age 91, right hemisphere 14.9
Hippocampus, CA3
nTPM: 17.0
2137 Male, age 80, left hemisphere 22.8
1867 Male, age 76, both hemispheres 20.2
2436 Male, age 74, both hemispheres 19.1
1891 Female, age 85, both hemispheres 15.6
2861 Female, age 67, both hemispheres 12.6
2620 Female, age 94, left hemisphere 11.8
Parahippocampal cortex
nTPM: 17.7
1850 Male, age 80, both hemispheres 24.2
2245 Female, age 91, both hemispheres 21.9
1990 Female, age 91, right hemisphere 18.5
1933 Female, age 85, both hemispheres 18.0
2692 Male, age 74, both hemispheres 17.9
2250 Female, age 67, right hemisphere 17.4
2693 Female, age 94, both hemispheres 16.0
2532 Female, age 72, left hemisphere 15.5
2018 Male, age 76, both hemispheres 14.4
2622 Female, age 67, right hemisphere 13.0
Perirhinal gyrus
nTPM: 19.9
1847 Female, age 91, left hemisphere 26.0
1794 Male, age 80, right hemisphere 21.1
1841 Female, age 85, right hemisphere 19.5
2521 Female, age 94, right hemisphere 16.9
2848 Male, age 76, right hemisphere 16.3
Subiculum
nTPM: 17.3
1901 Male, age 80, both hemispheres 20.4
2438 Female, age 94, left hemisphere 19.1
1977 Female, age 85, both hemispheres 18.1
2619 Male, age 74, both hemispheres 17.7
2042 Male, age 76, both hemispheres 14.8
2729 Female, age 91, right hemisphere 13.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.8
Samples: 197

Max nTPM: 62.2
Min nTPM: 6.4
Std nTPM: 7.9
Median nTPM: 23.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 62.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 44.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 44.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 43.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 43.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 41.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 39.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 39.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 39.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 38.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 37.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.4
FF:10169-103B7 60 years, female 36.3
FF:10153-102I9 76 years, female 26.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 55.5
Pig sample Sample description nTPM
Subiculum
nTPM: 31.2
Samples: 4

Max nTPM: 39.0
Min nTPM: 25.3
Sample A Female 39.0
Sample B Female 32.5
Sample C Male 25.3
Sample D Male 27.8
Dorsal hippocampus
nTPM: 55.6
Samples: 4

Max nTPM: 82.8
Min nTPM: 28.1
Sample A Female 82.8
Sample B Female 53.1
Sample C Male 58.2
Sample D Male 28.1
Entorhinal cortex
nTPM: 30.4
Samples: 4

Max nTPM: 41.6
Min nTPM: 24.2
Sample A Female 27.5
Sample B Female 41.6
Sample C Male 28.2
Sample D Male 24.2
Ventral hippocampus
nTPM: 43.8
Samples: 4

Max nTPM: 56.0
Min nTPM: 37.0
Sample A Female 56.0
Sample B Female 37.2
Sample C Male 37.0
Sample D Male 44.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 50.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 48.3
Samples: 4

Max nTPM: 51.3
Min nTPM: 44.8
Sample A Male 47.0
Sample B Male 50.0
Sample C Female 51.3
Sample D Female 44.8
Hippocampal formation
nTPM: 50.2
Samples: 4

Max nTPM: 54.2
Min nTPM: 47.6
Sample A Male 54.2
Sample B Male 47.6
Sample C Female 47.8
Sample D Female 51.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
512531 Antisense, RP_040809_02_B03, Mouse strain C57BL/6J (56 days, male) 0.5

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