MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.9 nTPM
HPA Brain:23.6 nTPM
GTEx:31.9 nTPM
FANTOM5:92.3 Scaled Tags Per Million
Pig:33.4 nTPM
Mouse:60.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.9
2411 Female, age 72, unknown 28.4
1870 Female, age 42, unknown 24.1
1830 Male, age 51, unknown 20.8
2019 Male, age 18, unknown 20.8
1827 Male, age 72, unknown 20.4
2219 Male, age 76, both hemispheres 20.3
1833 Male, age 53, unknown 20.1
2666 Male, age 74, left hemisphere 20.0
2828 Female, age 72, unknown 19.0
2586 Male, age 75, left hemisphere 15.4
Dorsal raphe nucleus
nTPM: 23.1
2298 Female, age 72, unknown 26.2
2750 Male, age 76, both hemispheres 24.3
2047 Male, age 72, unknown 23.1
1828 Male, age 53, unknown 22.2
2016 Female, age 72, unknown 19.6
Inferior colliculus
nTPM: 19.5
2097 Female, age 72, unknown 21.5
1848 Female, age 42, unknown 20.6
1890 Male, age 53, unknown 19.4
2849 Male, age 72, unknown 16.4
Median raphe nucleus
nTPM: 22.4
2220 Male, age 76, midline 22.4
Periaquaductal grey, anterior
nTPM: 20.5
2502 Female, age 75, unknown 22.8
1947 Male, age 18, unknown 20.8
1795 Male, age 51, unknown 17.8
Periaquaductal grey, dorsal
nTPM: 16.6
1840 Male, age 53, unknown 18.4
2850 Male, age 76, both hemispheres 17.2
1831 Male, age 72, unknown 15.5
2464 Female, age 72, unknown 15.5
Periaquaductal grey, lateral
nTPM: 18.6
2272 Male, age 74, both hemispheres 20.4
2140 Male, age 76, both hemispheres 17.8
2053 Male, age 18, unknown 17.7
Pretectal area
nTPM: 17.5
1817 Female, age 42, unknown 20.2
2224 Female, age 72, unknown 20.1
2825 Male, age 18, unknown 20.0
2316 Male, age 76, right hemisphere 19.5
2007 Male, age 72, unknown 18.8
2667 Female, age 75, unknown 18.1
1815 Male, age 53, unknown 16.0
2273 Male, age 74, both hemispheres 15.8
1944 Female, age 72, unknown 14.9
1816 Male, age 51, unknown 14.7
2407 Male, age 75, both hemispheres 14.7
Red nucleus
nTPM: 20.5
1821 Female, age 72, unknown 26.3
1954 Female, age 42, unknown 23.8
1904 Male, age 53, unknown 22.8
1865 Male, age 51, unknown 22.1
2227 Male, age 72, unknown 21.6
2725 Female, age 75, unknown 21.4
2503 Female, age 72, unknown 20.0
2769 Male, age 72, unknown 19.7
2584 Male, age 75, left hemisphere 17.6
2588 Male, age 74, left hemisphere 17.2
2785 Male, age 18, unknown 16.6
2823 Male, age 76, right hemisphere 16.6
Substantia nigra
nTPM: 23.1
2665 Male, age 74, both hemispheres 29.2
1851 Male, age 51, unknown 28.8
1916 Female, age 42, unknown 27.9
2241 Male, age 72, unknown 25.1
1941 Male, age 53, unknown 24.8
2699 Male, age 18, unknown 24.5
1889 Female, age 72, unknown 20.3
2583 Male, age 75, right hemisphere 18.7
2409 Female, age 72, unknown 16.1
2590 Female, age 75, unknown 15.3
Superior colliculus
nTPM: 18.0
2668 Female, age 75, unknown 21.3
1895 Male, age 76, right hemisphere 21.1
2587 Male, age 74, left hemisphere 20.8
1839 Male, age 51, unknown 18.9
1995 Male, age 72, unknown 18.3
1913 Female, age 42, unknown 18.1
1796 Male, age 53, unknown 17.8
2261 Male, age 18, unknown 17.7
2087 Female, age 72, unknown 15.3
2664 Male, age 75, both hemispheres 11.1
Ventral tegmental area
nTPM: 23.6
2410 Female, age 72, unknown 29.4
2218 Male, age 76, both hemispheres 26.4
1915 Female, age 42, unknown 24.1
1942 Male, age 51, unknown 21.2
2223 Female, age 72, unknown 21.0
2021 Male, age 53, unknown 19.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.9
Samples: 139

Max nTPM: 65.6
Min nTPM: 16.7
Std nTPM: 6.8
Median nTPM: 31.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 65.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 54.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 49.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 47.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 44.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 43.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 42.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 42.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 41.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 39.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.3
FF:10158-103A5 76 years, female 92.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.4
Samples: 4

Max nTPM: 36.0
Min nTPM: 30.4
Sample A Female 36.0
Sample B Female 30.4
Sample C Male 32.4
Sample D Male 34.7
Midbrain
nTPM: 31.7
Samples: 4

Max nTPM: 41.6
Min nTPM: 26.4
Sample A Female 41.6
Sample B Female 31.3
Sample C Male 26.4
Sample D Male 27.4
Periaqueductal gray
nTPM: 30.5
Samples: 3

Max nTPM: 31.9
Min nTPM: 27.9
Sample B Female 31.8
Sample C Male 31.9
Sample D Male 27.9
Superior colliculi
nTPM: 31.7
Samples: 4

Max nTPM: 34.0
Min nTPM: 29.8
Sample A Female 32.2
Sample B Female 34.0
Sample C Male 29.8
Sample D Male 30.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.7
Samples: 4

Max nTPM: 62.9
Min nTPM: 58.4
Sample A Male 62.3
Sample B Male 62.9
Sample C Female 58.4
Sample D Female 59.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71724750 Antisense, RP_050921_01_F01, Mouse strain C57BL/6J (56 days, male) 0.4

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