MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.3 nTPM
HPA Brain:73.7 nTPM
GTEx:51.3 nTPM
FANTOM5:43.5 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:36.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.6
2586 Male, age 75, left hemisphere 76.2
2019 Male, age 18, unknown 72.4
1827 Male, age 72, unknown 66.9
2219 Male, age 76, both hemispheres 65.6
2666 Male, age 74, left hemisphere 64.2
2828 Female, age 72, unknown 62.8
2411 Female, age 72, unknown 56.4
1833 Male, age 53, unknown 45.9
1830 Male, age 51, unknown 42.9
1870 Female, age 42, unknown 42.6
Dorsal raphe nucleus
nTPM: 51.7
1828 Male, age 53, unknown 59.0
2298 Female, age 72, unknown 53.5
2047 Male, age 72, unknown 53.3
2750 Male, age 76, both hemispheres 49.5
2016 Female, age 72, unknown 43.4
Inferior colliculus
nTPM: 51.7
2097 Female, age 72, unknown 58.8
1890 Male, age 53, unknown 58.5
1848 Female, age 42, unknown 48.2
2849 Male, age 72, unknown 41.4
Median raphe nucleus
nTPM: 53.4
2220 Male, age 76, midline 53.4
Periaquaductal grey, anterior
nTPM: 64.1
1795 Male, age 51, unknown 67.7
1947 Male, age 18, unknown 63.3
2502 Female, age 75, unknown 61.2
Periaquaductal grey, dorsal
nTPM: 46.0
1831 Male, age 72, unknown 49.4
2850 Male, age 76, both hemispheres 45.5
2464 Female, age 72, unknown 45.0
1840 Male, age 53, unknown 44.2
Periaquaductal grey, lateral
nTPM: 45.6
2140 Male, age 76, both hemispheres 46.0
2053 Male, age 18, unknown 45.5
2272 Male, age 74, both hemispheres 45.4
Pretectal area
nTPM: 66.4
1816 Male, age 51, unknown 96.9
2007 Male, age 72, unknown 91.0
1817 Female, age 42, unknown 85.6
1944 Female, age 72, unknown 85.4
1815 Male, age 53, unknown 70.9
2667 Female, age 75, unknown 62.5
2407 Male, age 75, both hemispheres 52.1
2316 Male, age 76, right hemisphere 48.6
2224 Female, age 72, unknown 47.5
2825 Male, age 18, unknown 45.0
2273 Male, age 74, both hemispheres 44.7
Red nucleus
nTPM: 57.9
2785 Male, age 18, unknown 70.7
2588 Male, age 74, left hemisphere 67.3
1821 Female, age 72, unknown 63.4
2725 Female, age 75, unknown 60.2
2503 Female, age 72, unknown 57.7
2584 Male, age 75, left hemisphere 57.0
1954 Female, age 42, unknown 55.0
2769 Male, age 72, unknown 54.9
1904 Male, age 53, unknown 53.9
1865 Male, age 51, unknown 53.0
2227 Male, age 72, unknown 51.1
2823 Male, age 76, right hemisphere 51.0
Substantia nigra
nTPM: 73.7
1916 Female, age 42, unknown 102.4
1851 Male, age 51, unknown 85.5
1941 Male, age 53, unknown 79.9
2665 Male, age 74, both hemispheres 78.8
1889 Female, age 72, unknown 77.3
2241 Male, age 72, unknown 72.8
2409 Female, age 72, unknown 64.4
2583 Male, age 75, right hemisphere 63.3
2699 Male, age 18, unknown 59.1
2590 Female, age 75, unknown 53.5
Superior colliculus
nTPM: 57.7
2668 Female, age 75, unknown 78.0
2087 Female, age 72, unknown 74.3
2261 Male, age 18, unknown 65.3
1796 Male, age 53, unknown 65.0
2664 Male, age 75, both hemispheres 58.9
1895 Male, age 76, right hemisphere 50.3
2587 Male, age 74, left hemisphere 47.9
1913 Female, age 42, unknown 47.4
1995 Male, age 72, unknown 45.1
1839 Male, age 51, unknown 44.5
Ventral tegmental area
nTPM: 62.6
2410 Female, age 72, unknown 81.3
1915 Female, age 42, unknown 72.1
2218 Male, age 76, both hemispheres 71.8
1942 Male, age 51, unknown 60.3
2021 Male, age 53, unknown 46.6
2223 Female, age 72, unknown 43.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.3
Samples: 139

Max nTPM: 99.3
Min nTPM: 24.8
Std nTPM: 15.8
Median nTPM: 47.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 99.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 95.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 90.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 89.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 88.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 87.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 85.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 82.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 80.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 79.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 75.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.5
FF:10158-103A5 76 years, female 43.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 24.4
Min nTPM: 17.1
Sample A Female 20.0
Sample B Female 17.1
Sample C Male 24.4
Sample D Male 18.3
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 37.5
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 15.6
Sample C Male 37.5
Sample D Male 27.9
Periaqueductal gray
nTPM: 16.7
Samples: 3

Max nTPM: 19.7
Min nTPM: 15.2
Sample B Female 15.2
Sample C Male 19.7
Sample D Male 15.2
Superior colliculi
nTPM: 28.9
Samples: 4

Max nTPM: 35.5
Min nTPM: 24.5
Sample A Female 24.5
Sample B Female 26.3
Sample C Male 35.5
Sample D Male 29.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 38.2
Min nTPM: 34.3
Sample A Male 34.7
Sample B Male 34.3
Sample C Female 37.6
Sample D Female 38.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70795835 Antisense, RP_050712_02_A11, Mouse strain C57BL/6J (56 days, male) 1.1
68844337 Antisense, RP_050222_01_D09, Mouse strain C57BL/6J (56 days, male) 0.1

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