MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.3 nTPM
HPA Brain:28.9 nTPM
GTEx:22.3 nTPM
FANTOM5:50.7 Scaled Tags Per Million
Pig:58.5 nTPM
Mouse:33.6 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.0
2411 Female, age 72, unknown 24.9
2019 Male, age 18, unknown 24.4
1827 Male, age 72, unknown 21.6
1833 Male, age 53, unknown 21.4
2828 Female, age 72, unknown 21.3
1870 Female, age 42, unknown 21.0
2219 Male, age 76, both hemispheres 20.3
1830 Male, age 51, unknown 18.8
2666 Male, age 74, left hemisphere 14.7
2586 Male, age 75, left hemisphere 11.8
Dorsal raphe nucleus
nTPM: 23.0
2298 Female, age 72, unknown 34.2
1828 Male, age 53, unknown 21.6
2750 Male, age 76, both hemispheres 20.4
2016 Female, age 72, unknown 19.7
2047 Male, age 72, unknown 19.2
Inferior colliculus
nTPM: 19.8
2097 Female, age 72, unknown 23.8
1848 Female, age 42, unknown 19.1
1890 Male, age 53, unknown 18.4
2849 Male, age 72, unknown 18.0
Median raphe nucleus
nTPM: 23.1
2220 Male, age 76, midline 23.1
Periaquaductal grey, anterior
nTPM: 22.3
1795 Male, age 51, unknown 23.6
1947 Male, age 18, unknown 23.2
2502 Female, age 75, unknown 20.1
Periaquaductal grey, dorsal
nTPM: 19.7
2850 Male, age 76, both hemispheres 23.0
1831 Male, age 72, unknown 20.5
1840 Male, age 53, unknown 19.0
2464 Female, age 72, unknown 16.3
Periaquaductal grey, lateral
nTPM: 28.9
2272 Male, age 74, both hemispheres 47.3
2053 Male, age 18, unknown 20.2
2140 Male, age 76, both hemispheres 19.3
Pretectal area
nTPM: 27.5
2273 Male, age 74, both hemispheres 38.2
1944 Female, age 72, unknown 31.8
2667 Female, age 75, unknown 31.8
1816 Male, age 51, unknown 30.9
1817 Female, age 42, unknown 28.6
2224 Female, age 72, unknown 28.0
2007 Male, age 72, unknown 26.8
1815 Male, age 53, unknown 23.0
2407 Male, age 75, both hemispheres 22.3
2825 Male, age 18, unknown 21.3
2316 Male, age 76, right hemisphere 19.3
Red nucleus
nTPM: 20.0
2725 Female, age 75, unknown 24.6
2785 Male, age 18, unknown 24.5
1821 Female, age 72, unknown 24.1
1904 Male, age 53, unknown 21.8
2769 Male, age 72, unknown 20.6
2503 Female, age 72, unknown 20.1
1954 Female, age 42, unknown 19.8
2227 Male, age 72, unknown 19.5
1865 Male, age 51, unknown 19.2
2823 Male, age 76, right hemisphere 18.3
2584 Male, age 75, left hemisphere 15.6
2588 Male, age 74, left hemisphere 12.4
Substantia nigra
nTPM: 18.5
2409 Female, age 72, unknown 26.1
1889 Female, age 72, unknown 24.4
1916 Female, age 42, unknown 20.4
1851 Male, age 51, unknown 19.7
1941 Male, age 53, unknown 18.8
2241 Male, age 72, unknown 17.8
2590 Female, age 75, unknown 17.4
2699 Male, age 18, unknown 15.6
2583 Male, age 75, right hemisphere 14.7
2665 Male, age 74, both hemispheres 10.4
Superior colliculus
nTPM: 21.3
2587 Male, age 74, left hemisphere 26.0
2261 Male, age 18, unknown 25.1
2087 Female, age 72, unknown 23.5
1796 Male, age 53, unknown 23.2
1995 Male, age 72, unknown 23.2
1913 Female, age 42, unknown 21.5
1839 Male, age 51, unknown 20.1
1895 Male, age 76, right hemisphere 19.7
2668 Female, age 75, unknown 16.3
2664 Male, age 75, both hemispheres 14.9
Ventral tegmental area
nTPM: 20.7
2410 Female, age 72, unknown 26.2
2218 Male, age 76, both hemispheres 21.5
2223 Female, age 72, unknown 20.2
2021 Male, age 53, unknown 19.9
1915 Female, age 42, unknown 19.2
1942 Male, age 51, unknown 17.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.3
Samples: 139

Max nTPM: 35.8
Min nTPM: 12.8
Std nTPM: 5.2
Median nTPM: 21.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 35.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 34.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 34.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 33.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 33.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 32.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 32.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 31.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 31.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 31.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.7
FF:10158-103A5 76 years, female 50.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.2
Samples: 4

Max nTPM: 71.6
Min nTPM: 35.3
Sample A Female 71.6
Sample B Female 44.4
Sample C Male 49.4
Sample D Male 35.3
Midbrain
nTPM: 58.6
Samples: 4

Max nTPM: 73.0
Min nTPM: 47.5
Sample A Female 65.7
Sample B Female 48.0
Sample C Male 73.0
Sample D Male 47.5
Periaqueductal gray
nTPM: 45.7
Samples: 3

Max nTPM: 49.8
Min nTPM: 40.9
Sample B Female 49.8
Sample C Male 46.5
Sample D Male 40.9
Superior colliculi
nTPM: 54.5
Samples: 4

Max nTPM: 71.5
Min nTPM: 41.2
Sample A Female 59.7
Sample B Female 41.2
Sample C Male 71.5
Sample D Male 45.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 36.8
Min nTPM: 30.9
Sample A Male 33.8
Sample B Male 36.8
Sample C Female 30.9
Sample D Female 32.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69734815 Antisense, RP_050503_01_C12, Mouse strain C57BL/6J (56 days, male) 1.5

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