MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:103.2 nTPM
HPA Brain:110.6 nTPM
GTEx:103.2 nTPM
FANTOM5:127.9 Scaled Tags Per Million
Pig:273.8 nTPM
Mouse:420.5 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.5
2411 Female, age 72, unknown 109.7
1827 Male, age 72, unknown 105.0
2219 Male, age 76, both hemispheres 98.1
2019 Male, age 18, unknown 92.3
1870 Female, age 42, unknown 91.0
2666 Male, age 74, left hemisphere 91.0
1833 Male, age 53, unknown 89.2
2828 Female, age 72, unknown 87.4
1830 Male, age 51, unknown 87.2
2586 Male, age 75, left hemisphere 74.2
Dorsal raphe nucleus
nTPM: 96.2
2750 Male, age 76, both hemispheres 107.3
2298 Female, age 72, unknown 105.1
2047 Male, age 72, unknown 99.4
2016 Female, age 72, unknown 85.5
1828 Male, age 53, unknown 83.8
Inferior colliculus
nTPM: 84.8
2097 Female, age 72, unknown 98.9
1890 Male, age 53, unknown 88.1
1848 Female, age 42, unknown 76.6
2849 Male, age 72, unknown 75.6
Median raphe nucleus
nTPM: 110.6
2220 Male, age 76, midline 110.6
Periaquaductal grey, anterior
nTPM: 100.9
1947 Male, age 18, unknown 106.2
2502 Female, age 75, unknown 99.4
1795 Male, age 51, unknown 97.1
Periaquaductal grey, dorsal
nTPM: 87.0
1831 Male, age 72, unknown 96.7
2850 Male, age 76, both hemispheres 87.0
2464 Female, age 72, unknown 85.4
1840 Male, age 53, unknown 78.9
Periaquaductal grey, lateral
nTPM: 94.3
2272 Male, age 74, both hemispheres 98.5
2053 Male, age 18, unknown 98.4
2140 Male, age 76, both hemispheres 85.8
Pretectal area
nTPM: 103.6
1816 Male, age 51, unknown 123.1
1944 Female, age 72, unknown 113.2
1817 Female, age 42, unknown 109.8
1815 Male, age 53, unknown 106.5
2007 Male, age 72, unknown 104.6
2667 Female, age 75, unknown 101.2
2224 Female, age 72, unknown 98.6
2316 Male, age 76, right hemisphere 98.2
2273 Male, age 74, both hemispheres 97.4
2825 Male, age 18, unknown 95.6
2407 Male, age 75, both hemispheres 91.1
Red nucleus
nTPM: 87.2
2823 Male, age 76, right hemisphere 97.9
1904 Male, age 53, unknown 96.4
1821 Female, age 72, unknown 95.2
2725 Female, age 75, unknown 89.1
1954 Female, age 42, unknown 87.4
2584 Male, age 75, left hemisphere 86.4
2785 Male, age 18, unknown 85.2
1865 Male, age 51, unknown 84.5
2588 Male, age 74, left hemisphere 83.9
2503 Female, age 72, unknown 83.3
2227 Male, age 72, unknown 79.5
2769 Male, age 72, unknown 78.2
Substantia nigra
nTPM: 102.3
2409 Female, age 72, unknown 129.9
2241 Male, age 72, unknown 117.1
1916 Female, age 42, unknown 109.1
1941 Male, age 53, unknown 108.7
1889 Female, age 72, unknown 101.6
1851 Male, age 51, unknown 98.9
2590 Female, age 75, unknown 98.5
2665 Male, age 74, both hemispheres 87.2
2583 Male, age 75, right hemisphere 86.8
2699 Male, age 18, unknown 85.2
Superior colliculus
nTPM: 94.7
2261 Male, age 18, unknown 112.0
2087 Female, age 72, unknown 103.9
2668 Female, age 75, unknown 98.2
2587 Male, age 74, left hemisphere 97.9
1895 Male, age 76, right hemisphere 94.8
1796 Male, age 53, unknown 93.6
1839 Male, age 51, unknown 92.3
1913 Female, age 42, unknown 88.9
1995 Male, age 72, unknown 82.9
2664 Male, age 75, both hemispheres 82.3
Ventral tegmental area
nTPM: 101.1
2218 Male, age 76, both hemispheres 109.2
2410 Female, age 72, unknown 106.9
2021 Male, age 53, unknown 102.8
1942 Male, age 51, unknown 100.0
1915 Female, age 42, unknown 96.4
2223 Female, age 72, unknown 91.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.2
Samples: 139

Max nTPM: 183.2
Min nTPM: 56.9
Std nTPM: 23.6
Median nTPM: 99.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 183.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 182.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 177.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 163.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 157.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 156.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 154.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 148.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 140.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 135.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 132.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 127.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.9
FF:10158-103A5 76 years, female 127.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 273.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 254.3
Samples: 4

Max nTPM: 293.5
Min nTPM: 227.6
Sample A Female 293.5
Sample B Female 246.4
Sample C Male 249.7
Sample D Male 227.6
Midbrain
nTPM: 273.9
Samples: 4

Max nTPM: 374.4
Min nTPM: 206.3
Sample A Female 374.4
Sample B Female 253.7
Sample C Male 261.0
Sample D Male 206.3
Periaqueductal gray
nTPM: 223.0
Samples: 3

Max nTPM: 244.0
Min nTPM: 208.4
Sample B Female 216.5
Sample C Male 244.0
Sample D Male 208.4
Superior colliculi
nTPM: 245.9
Samples: 4

Max nTPM: 273.8
Min nTPM: 211.5
Sample A Female 261.9
Sample B Female 211.5
Sample C Male 273.8
Sample D Male 236.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 420.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 420.5
Samples: 4

Max nTPM: 427.9
Min nTPM: 415.0
Sample A Male 418.0
Sample B Male 421.2
Sample C Female 415.0
Sample D Female 427.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
71021145 Antisense, RP_050526_02_G07, Mouse strain C57BL/6J (56 days, male) 6.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org