MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.0 nTPM
HPA Brain:140.5 nTPM
GTEx:10.0 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:9.6 nTPM
Mouse:54.7 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 140.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 120.4
2219 Male, age 76, both hemispheres 156.7
1833 Male, age 53, unknown 137.7
1830 Male, age 51, unknown 130.4
2411 Female, age 72, unknown 125.0
1827 Male, age 72, unknown 122.9
2828 Female, age 72, unknown 116.3
2019 Male, age 18, unknown 115.4
2666 Male, age 74, left hemisphere 105.7
2586 Male, age 75, left hemisphere 104.8
1870 Female, age 42, unknown 89.5
Dorsal raphe nucleus
nTPM: 117.4
2750 Male, age 76, both hemispheres 133.0
2047 Male, age 72, unknown 121.0
2016 Female, age 72, unknown 116.1
2298 Female, age 72, unknown 109.0
1828 Male, age 53, unknown 108.1
Inferior colliculus
nTPM: 123.9
2849 Male, age 72, unknown 146.8
1848 Female, age 42, unknown 117.6
1890 Male, age 53, unknown 117.6
2097 Female, age 72, unknown 113.4
Median raphe nucleus
nTPM: 125.8
2220 Male, age 76, midline 125.8
Periaquaductal grey, anterior
nTPM: 110.4
1947 Male, age 18, unknown 120.6
1795 Male, age 51, unknown 108.8
2502 Female, age 75, unknown 101.7
Periaquaductal grey, dorsal
nTPM: 130.0
2464 Female, age 72, unknown 143.2
2850 Male, age 76, both hemispheres 133.2
1831 Male, age 72, unknown 126.5
1840 Male, age 53, unknown 116.9
Periaquaductal grey, lateral
nTPM: 140.5
2140 Male, age 76, both hemispheres 161.4
2272 Male, age 74, both hemispheres 146.8
2053 Male, age 18, unknown 113.4
Pretectal area
nTPM: 120.5
2316 Male, age 76, right hemisphere 144.0
2273 Male, age 74, both hemispheres 142.5
2825 Male, age 18, unknown 128.5
2667 Female, age 75, unknown 126.9
2224 Female, age 72, unknown 124.8
2407 Male, age 75, both hemispheres 122.6
1816 Male, age 51, unknown 114.9
1944 Female, age 72, unknown 114.9
1815 Male, age 53, unknown 112.0
2007 Male, age 72, unknown 104.9
1817 Female, age 42, unknown 89.7
Red nucleus
nTPM: 121.0
2823 Male, age 76, right hemisphere 139.3
2503 Female, age 72, unknown 134.8
2588 Male, age 74, left hemisphere 131.8
2227 Male, age 72, unknown 127.6
1865 Male, age 51, unknown 123.0
2584 Male, age 75, left hemisphere 119.0
2769 Male, age 72, unknown 118.8
2725 Female, age 75, unknown 118.6
1904 Male, age 53, unknown 118.5
1954 Female, age 42, unknown 116.4
2785 Male, age 18, unknown 114.7
1821 Female, age 72, unknown 89.0
Substantia nigra
nTPM: 111.0
2590 Female, age 75, unknown 129.3
1941 Male, age 53, unknown 128.9
2583 Male, age 75, right hemisphere 122.2
2409 Female, age 72, unknown 117.0
2699 Male, age 18, unknown 114.3
1916 Female, age 42, unknown 102.0
1851 Male, age 51, unknown 101.9
2241 Male, age 72, unknown 101.3
2665 Male, age 74, both hemispheres 97.7
1889 Female, age 72, unknown 94.9
Superior colliculus
nTPM: 114.5
2087 Female, age 72, unknown 134.0
2261 Male, age 18, unknown 124.1
1895 Male, age 76, right hemisphere 118.6
1913 Female, age 42, unknown 115.2
1839 Male, age 51, unknown 113.4
2664 Male, age 75, both hemispheres 113.0
1995 Male, age 72, unknown 109.1
1796 Male, age 53, unknown 108.8
2587 Male, age 74, left hemisphere 108.4
2668 Female, age 75, unknown 100.7
Ventral tegmental area
nTPM: 117.5
2223 Female, age 72, unknown 124.7
2218 Male, age 76, both hemispheres 124.2
2021 Male, age 53, unknown 124.1
1942 Male, age 51, unknown 120.2
2410 Female, age 72, unknown 110.2
1915 Female, age 42, unknown 102.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.0
Samples: 139

Max nTPM: 15.6
Min nTPM: 7.2
Std nTPM: 1.6
Median nTPM: 9.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 14.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 14.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 13.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 13.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 13.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 13.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 13.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 12.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.9
FF:10158-103A5 76 years, female 24.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.1
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.1
Sample A Female 10.4
Sample B Female 8.5
Sample C Male 9.5
Sample D Male 8.1
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.2
Sample A Female 9.4
Sample B Female 9.2
Sample C Male 9.3
Sample D Male 10.5
Periaqueductal gray
nTPM: 9.0
Samples: 3

Max nTPM: 9.9
Min nTPM: 8.0
Sample B Female 8.0
Sample C Male 9.0
Sample D Male 9.9
Superior colliculi
nTPM: 9.0
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.0
Sample A Female 9.6
Sample B Female 7.0
Sample C Male 9.5
Sample D Male 9.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.7
Samples: 4

Max nTPM: 57.3
Min nTPM: 52.6
Sample A Male 52.6
Sample B Male 54.3
Sample C Female 54.7
Sample D Female 57.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
67765722 Antisense, RP_040916_01_F06, Mouse strain C57BL/6J (56 days, male) 0.8

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