MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.9 nTPM
HPA Brain:74.9 nTPM
GTEx:32.9 nTPM
FANTOM5:92.1 Scaled Tags Per Million
Pig:65.7 nTPM
Mouse:65.0 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.5
2586 Male, age 75, left hemisphere 84.0
2019 Male, age 18, unknown 73.8
1870 Female, age 42, unknown 73.3
1833 Male, age 53, unknown 70.8
1827 Male, age 72, unknown 69.8
2411 Female, age 72, unknown 69.3
2666 Male, age 74, left hemisphere 68.4
1830 Male, age 51, unknown 67.4
2219 Male, age 76, both hemispheres 65.2
2828 Female, age 72, unknown 63.5
Dorsal raphe nucleus
nTPM: 67.3
2047 Male, age 72, unknown 70.3
2016 Female, age 72, unknown 67.8
1828 Male, age 53, unknown 67.7
2298 Female, age 72, unknown 65.4
2750 Male, age 76, both hemispheres 65.1
Inferior colliculus
nTPM: 68.8
2097 Female, age 72, unknown 76.4
1848 Female, age 42, unknown 66.7
1890 Male, age 53, unknown 66.3
2849 Male, age 72, unknown 66.0
Median raphe nucleus
nTPM: 63.0
2220 Male, age 76, midline 63.0
Periaquaductal grey, anterior
nTPM: 70.9
2502 Female, age 75, unknown 76.9
1947 Male, age 18, unknown 68.3
1795 Male, age 51, unknown 67.5
Periaquaductal grey, dorsal
nTPM: 64.5
1840 Male, age 53, unknown 71.4
2464 Female, age 72, unknown 68.8
1831 Male, age 72, unknown 60.0
2850 Male, age 76, both hemispheres 57.7
Periaquaductal grey, lateral
nTPM: 61.8
2053 Male, age 18, unknown 67.1
2140 Male, age 76, both hemispheres 60.8
2272 Male, age 74, both hemispheres 57.5
Pretectal area
nTPM: 68.6
2007 Male, age 72, unknown 76.3
1944 Female, age 72, unknown 74.9
1817 Female, age 42, unknown 74.6
1816 Male, age 51, unknown 72.7
1815 Male, age 53, unknown 70.8
2825 Male, age 18, unknown 68.2
2224 Female, age 72, unknown 68.0
2407 Male, age 75, both hemispheres 65.3
2667 Female, age 75, unknown 64.9
2273 Male, age 74, both hemispheres 61.8
2316 Male, age 76, right hemisphere 57.0
Red nucleus
nTPM: 72.3
1954 Female, age 42, unknown 78.4
1821 Female, age 72, unknown 78.3
1904 Male, age 53, unknown 75.1
2785 Male, age 18, unknown 74.6
2584 Male, age 75, left hemisphere 73.8
2503 Female, age 72, unknown 73.5
2769 Male, age 72, unknown 72.7
1865 Male, age 51, unknown 71.9
2588 Male, age 74, left hemisphere 70.9
2227 Male, age 72, unknown 68.0
2725 Female, age 75, unknown 67.1
2823 Male, age 76, right hemisphere 63.2
Substantia nigra
nTPM: 74.9
2241 Male, age 72, unknown 83.6
2409 Female, age 72, unknown 80.9
1851 Male, age 51, unknown 77.9
1916 Female, age 42, unknown 76.6
2583 Male, age 75, right hemisphere 76.4
1889 Female, age 72, unknown 74.7
2590 Female, age 75, unknown 72.6
1941 Male, age 53, unknown 71.6
2665 Male, age 74, both hemispheres 71.0
2699 Male, age 18, unknown 63.5
Superior colliculus
nTPM: 70.0
2587 Male, age 74, left hemisphere 75.4
2668 Female, age 75, unknown 75.1
2261 Male, age 18, unknown 72.4
1839 Male, age 51, unknown 71.3
2087 Female, age 72, unknown 70.2
2664 Male, age 75, both hemispheres 70.1
1796 Male, age 53, unknown 68.8
1895 Male, age 76, right hemisphere 68.3
1913 Female, age 42, unknown 65.4
1995 Male, age 72, unknown 63.3
Ventral tegmental area
nTPM: 66.2
2410 Female, age 72, unknown 73.3
2223 Female, age 72, unknown 68.7
1915 Female, age 42, unknown 66.9
2218 Male, age 76, both hemispheres 64.6
1942 Male, age 51, unknown 64.2
2021 Male, age 53, unknown 59.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.9
Samples: 139

Max nTPM: 47.1
Min nTPM: 20.5
Std nTPM: 5.8
Median nTPM: 32.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 47.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 46.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 46.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 45.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 44.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 43.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 43.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 42.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 42.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 41.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 41.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.1
FF:10158-103A5 76 years, female 92.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.4
Samples: 4

Max nTPM: 67.6
Min nTPM: 50.9
Sample A Female 67.6
Sample B Female 50.9
Sample C Male 59.7
Sample D Male 59.4
Midbrain
nTPM: 65.7
Samples: 4

Max nTPM: 75.6
Min nTPM: 57.8
Sample A Female 75.6
Sample B Female 57.8
Sample C Male 67.4
Sample D Male 61.8
Periaqueductal gray
nTPM: 57.2
Samples: 3

Max nTPM: 59.5
Min nTPM: 54.3
Sample B Female 59.5
Sample C Male 57.7
Sample D Male 54.3
Superior colliculi
nTPM: 58.2
Samples: 4

Max nTPM: 67.5
Min nTPM: 38.8
Sample A Female 65.6
Sample B Female 38.8
Sample C Male 67.5
Sample D Male 60.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 65.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.0
Samples: 4

Max nTPM: 66.0
Min nTPM: 62.3
Sample A Male 62.3
Sample B Male 66.0
Sample C Female 66.0
Sample D Female 65.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
532691 Antisense, RP_040825_01_E02, Mouse strain C57BL/6J (56 days, male) 1.5

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