MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.7 nTPM
HPA Brain:326.3 nTPM
GTEx:88.7 nTPM
FANTOM5:253.9 Scaled Tags Per Million
Pig:228.5 nTPM
Mouse:111.1 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 326.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 269.6
1833 Male, age 53, unknown 335.6
1830 Male, age 51, unknown 319.9
2019 Male, age 18, unknown 315.1
2411 Female, age 72, unknown 291.9
2666 Male, age 74, left hemisphere 289.3
1870 Female, age 42, unknown 275.2
2219 Male, age 76, both hemispheres 227.1
2828 Female, age 72, unknown 218.2
1827 Male, age 72, unknown 217.1
2586 Male, age 75, left hemisphere 206.7
Dorsal raphe nucleus
nTPM: 219.4
2750 Male, age 76, both hemispheres 299.9
2016 Female, age 72, unknown 238.1
1828 Male, age 53, unknown 212.9
2047 Male, age 72, unknown 175.8
2298 Female, age 72, unknown 170.4
Inferior colliculus
nTPM: 222.9
2849 Male, age 72, unknown 239.2
1848 Female, age 42, unknown 231.1
2097 Female, age 72, unknown 212.6
1890 Male, age 53, unknown 208.5
Median raphe nucleus
nTPM: 198.6
2220 Male, age 76, midline 198.6
Periaquaductal grey, anterior
nTPM: 218.9
2502 Female, age 75, unknown 262.9
1947 Male, age 18, unknown 226.0
1795 Male, age 51, unknown 167.7
Periaquaductal grey, dorsal
nTPM: 194.6
2464 Female, age 72, unknown 221.2
1831 Male, age 72, unknown 200.0
2850 Male, age 76, both hemispheres 190.0
1840 Male, age 53, unknown 167.2
Periaquaductal grey, lateral
nTPM: 203.6
2272 Male, age 74, both hemispheres 218.0
2053 Male, age 18, unknown 216.9
2140 Male, age 76, both hemispheres 175.9
Pretectal area
nTPM: 222.4
1815 Male, age 53, unknown 279.8
1817 Female, age 42, unknown 267.0
2007 Male, age 72, unknown 255.4
2316 Male, age 76, right hemisphere 250.3
1944 Female, age 72, unknown 220.3
2273 Male, age 74, both hemispheres 204.3
2825 Male, age 18, unknown 202.9
2224 Female, age 72, unknown 194.9
1816 Male, age 51, unknown 194.8
2667 Female, age 75, unknown 192.0
2407 Male, age 75, both hemispheres 184.7
Red nucleus
nTPM: 326.3
1865 Male, age 51, unknown 387.0
1904 Male, age 53, unknown 377.6
2823 Male, age 76, right hemisphere 371.3
1821 Female, age 72, unknown 361.2
2503 Female, age 72, unknown 346.8
1954 Female, age 42, unknown 342.3
2785 Male, age 18, unknown 309.5
2588 Male, age 74, left hemisphere 307.3
2725 Female, age 75, unknown 306.1
2769 Male, age 72, unknown 297.7
2227 Male, age 72, unknown 295.4
2584 Male, age 75, left hemisphere 213.3
Substantia nigra
nTPM: 263.5
2409 Female, age 72, unknown 344.1
2241 Male, age 72, unknown 302.4
2665 Male, age 74, both hemispheres 269.9
1889 Female, age 72, unknown 269.0
1851 Male, age 51, unknown 268.3
2699 Male, age 18, unknown 267.6
1941 Male, age 53, unknown 239.6
1916 Female, age 42, unknown 234.3
2590 Female, age 75, unknown 233.5
2583 Male, age 75, right hemisphere 206.3
Superior colliculus
nTPM: 249.8
2587 Male, age 74, left hemisphere 316.5
1913 Female, age 42, unknown 299.9
1995 Male, age 72, unknown 289.2
1895 Male, age 76, right hemisphere 286.7
2668 Female, age 75, unknown 269.9
1839 Male, age 51, unknown 268.6
2087 Female, age 72, unknown 207.3
2261 Male, age 18, unknown 201.9
1796 Male, age 53, unknown 201.6
2664 Male, age 75, both hemispheres 156.2
Ventral tegmental area
nTPM: 251.2
2410 Female, age 72, unknown 306.0
2223 Female, age 72, unknown 285.6
2218 Male, age 76, both hemispheres 256.2
1915 Female, age 42, unknown 221.1
1942 Male, age 51, unknown 220.6
2021 Male, age 53, unknown 217.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 88.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.7
Samples: 139

Max nTPM: 193.6
Min nTPM: 53.9
Std nTPM: 26.0
Median nTPM: 80.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 193.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 177.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 171.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 154.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 152.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 151.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 144.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 137.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 133.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 131.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 130.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 253.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 253.9
FF:10158-103A5 76 years, female 253.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 228.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 208.7
Samples: 4

Max nTPM: 236.9
Min nTPM: 176.6
Sample A Female 232.7
Sample B Female 176.6
Sample C Male 188.6
Sample D Male 236.9
Midbrain
nTPM: 228.6
Samples: 4

Max nTPM: 321.5
Min nTPM: 163.4
Sample A Female 321.5
Sample B Female 239.4
Sample C Male 190.0
Sample D Male 163.4
Periaqueductal gray
nTPM: 171.7
Samples: 3

Max nTPM: 194.2
Min nTPM: 159.1
Sample B Female 194.2
Sample C Male 159.1
Sample D Male 161.7
Superior colliculi
nTPM: 205.3
Samples: 4

Max nTPM: 240.7
Min nTPM: 141.3
Sample A Female 228.0
Sample B Female 141.3
Sample C Male 240.7
Sample D Male 211.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 111.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 111.1
Samples: 4

Max nTPM: 123.6
Min nTPM: 97.6
Sample A Male 97.6
Sample B Male 112.2
Sample C Female 123.6
Sample D Female 111.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
68301539 Antisense, RP_041130_01_D08, Mouse strain C57BL/6J (56 days, male) 3.6

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