MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.8 nTPM
HPA Brain:143.4 nTPM
GTEx:64.8 nTPM
FANTOM5:114.5 Scaled Tags Per Million
Pig:107.0 nTPM
Mouse:201.3 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 143.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.4
1870 Female, age 42, unknown 128.9
2411 Female, age 72, unknown 118.3
1827 Male, age 72, unknown 118.2
1833 Male, age 53, unknown 108.5
2828 Female, age 72, unknown 104.6
2586 Male, age 75, left hemisphere 102.6
1830 Male, age 51, unknown 99.1
2019 Male, age 18, unknown 98.8
2219 Male, age 76, both hemispheres 98.6
2666 Male, age 74, left hemisphere 76.9
Dorsal raphe nucleus
nTPM: 130.8
2298 Female, age 72, unknown 148.7
2047 Male, age 72, unknown 139.2
2750 Male, age 76, both hemispheres 129.2
2016 Female, age 72, unknown 119.9
1828 Male, age 53, unknown 117.1
Inferior colliculus
nTPM: 123.2
2097 Female, age 72, unknown 139.0
2849 Male, age 72, unknown 122.0
1848 Female, age 42, unknown 121.5
1890 Male, age 53, unknown 110.3
Median raphe nucleus
nTPM: 143.4
2220 Male, age 76, midline 143.4
Periaquaductal grey, anterior
nTPM: 117.7
1947 Male, age 18, unknown 124.8
2502 Female, age 75, unknown 114.5
1795 Male, age 51, unknown 113.9
Periaquaductal grey, dorsal
nTPM: 126.0
1840 Male, age 53, unknown 145.4
2850 Male, age 76, both hemispheres 138.5
2464 Female, age 72, unknown 117.5
1831 Male, age 72, unknown 102.8
Periaquaductal grey, lateral
nTPM: 115.2
2140 Male, age 76, both hemispheres 126.2
2272 Male, age 74, both hemispheres 110.2
2053 Male, age 18, unknown 109.1
Pretectal area
nTPM: 118.2
2667 Female, age 75, unknown 146.8
2224 Female, age 72, unknown 131.1
2273 Male, age 74, both hemispheres 124.6
1817 Female, age 42, unknown 121.7
2825 Male, age 18, unknown 119.0
2007 Male, age 72, unknown 118.1
1816 Male, age 51, unknown 117.6
1944 Female, age 72, unknown 116.9
1815 Male, age 53, unknown 112.4
2316 Male, age 76, right hemisphere 98.2
2407 Male, age 75, both hemispheres 93.8
Red nucleus
nTPM: 98.5
1821 Female, age 72, unknown 124.0
1954 Female, age 42, unknown 109.6
2725 Female, age 75, unknown 106.4
2823 Male, age 76, right hemisphere 99.1
1904 Male, age 53, unknown 98.9
2769 Male, age 72, unknown 98.3
2227 Male, age 72, unknown 97.2
1865 Male, age 51, unknown 95.9
2785 Male, age 18, unknown 95.3
2503 Female, age 72, unknown 95.1
2584 Male, age 75, left hemisphere 82.7
2588 Male, age 74, left hemisphere 79.4
Substantia nigra
nTPM: 103.5
2241 Male, age 72, unknown 129.2
1916 Female, age 42, unknown 125.0
1889 Female, age 72, unknown 120.6
1851 Male, age 51, unknown 108.9
1941 Male, age 53, unknown 106.9
2409 Female, age 72, unknown 106.5
2699 Male, age 18, unknown 98.2
2583 Male, age 75, right hemisphere 83.7
2590 Female, age 75, unknown 78.6
2665 Male, age 74, both hemispheres 77.5
Superior colliculus
nTPM: 101.3
1895 Male, age 76, right hemisphere 112.7
2261 Male, age 18, unknown 111.4
1839 Male, age 51, unknown 107.4
2087 Female, age 72, unknown 107.2
1796 Male, age 53, unknown 105.7
2587 Male, age 74, left hemisphere 102.8
2664 Male, age 75, both hemispheres 102.2
2668 Female, age 75, unknown 98.6
1913 Female, age 42, unknown 84.6
1995 Male, age 72, unknown 80.2
Ventral tegmental area
nTPM: 111.8
2218 Male, age 76, both hemispheres 120.2
1915 Female, age 42, unknown 113.7
2410 Female, age 72, unknown 112.2
1942 Male, age 51, unknown 108.9
2223 Female, age 72, unknown 108.0
2021 Male, age 53, unknown 107.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.8
Samples: 139

Max nTPM: 127.5
Min nTPM: 26.6
Std nTPM: 18.6
Median nTPM: 62.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 127.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 101.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 101.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 100.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 99.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 96.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 95.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 95.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 94.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 93.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 92.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.5
FF:10158-103A5 76 years, female 114.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 107.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 99.6
Samples: 4

Max nTPM: 119.3
Min nTPM: 70.5
Sample A Female 117.6
Sample B Female 90.8
Sample C Male 119.3
Sample D Male 70.5
Midbrain
nTPM: 107.0
Samples: 4

Max nTPM: 111.2
Min nTPM: 103.7
Sample A Female 103.7
Sample B Female 106.0
Sample C Male 107.2
Sample D Male 111.2
Periaqueductal gray
nTPM: 104.0
Samples: 3

Max nTPM: 116.6
Min nTPM: 95.0
Sample B Female 100.4
Sample C Male 116.6
Sample D Male 95.0
Superior colliculi
nTPM: 96.7
Samples: 4

Max nTPM: 109.0
Min nTPM: 80.9
Sample A Female 109.0
Sample B Female 80.9
Sample C Male 102.2
Sample D Male 94.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 201.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 201.3
Samples: 4

Max nTPM: 208.3
Min nTPM: 192.6
Sample A Male 192.6
Sample B Male 202.6
Sample C Female 208.3
Sample D Female 201.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
67765732 Antisense, RP_040916_01_G05, Mouse strain C57BL/6J (56 days, male) 5.2

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