MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA Brain:24.0 nTPM
GTEx:11.7 nTPM
FANTOM5:47.2 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:9.9 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.8
1870 Female, age 42, unknown 26.2
2411 Female, age 72, unknown 25.4
2019 Male, age 18, unknown 24.2
1827 Male, age 72, unknown 24.1
1833 Male, age 53, unknown 22.5
1830 Male, age 51, unknown 22.3
2828 Female, age 72, unknown 22.0
2666 Male, age 74, left hemisphere 21.7
2586 Male, age 75, left hemisphere 19.9
2219 Male, age 76, both hemispheres 19.2
Dorsal raphe nucleus
nTPM: 22.6
2750 Male, age 76, both hemispheres 24.3
2016 Female, age 72, unknown 23.1
2047 Male, age 72, unknown 23.1
2298 Female, age 72, unknown 21.5
1828 Male, age 53, unknown 20.9
Inferior colliculus
nTPM: 24.0
2849 Male, age 72, unknown 27.9
1890 Male, age 53, unknown 24.7
2097 Female, age 72, unknown 24.1
1848 Female, age 42, unknown 19.3
Median raphe nucleus
nTPM: 23.6
2220 Male, age 76, midline 23.6
Periaquaductal grey, anterior
nTPM: 22.8
1947 Male, age 18, unknown 24.3
2502 Female, age 75, unknown 22.7
1795 Male, age 51, unknown 21.5
Periaquaductal grey, dorsal
nTPM: 23.5
1840 Male, age 53, unknown 27.9
2464 Female, age 72, unknown 23.7
2850 Male, age 76, both hemispheres 22.9
1831 Male, age 72, unknown 19.6
Periaquaductal grey, lateral
nTPM: 24.0
2140 Male, age 76, both hemispheres 26.4
2053 Male, age 18, unknown 24.7
2272 Male, age 74, both hemispheres 20.8
Pretectal area
nTPM: 21.8
2316 Male, age 76, right hemisphere 25.1
2224 Female, age 72, unknown 23.1
1815 Male, age 53, unknown 23.0
2007 Male, age 72, unknown 22.9
2273 Male, age 74, both hemispheres 22.8
2825 Male, age 18, unknown 22.1
2667 Female, age 75, unknown 22.0
1817 Female, age 42, unknown 19.9
1944 Female, age 72, unknown 19.9
2407 Male, age 75, both hemispheres 19.8
1816 Male, age 51, unknown 19.5
Red nucleus
nTPM: 23.7
2503 Female, age 72, unknown 26.0
1821 Female, age 72, unknown 25.0
2584 Male, age 75, left hemisphere 24.8
2769 Male, age 72, unknown 24.1
1865 Male, age 51, unknown 24.0
1904 Male, age 53, unknown 23.9
2588 Male, age 74, left hemisphere 23.9
2823 Male, age 76, right hemisphere 23.4
2227 Male, age 72, unknown 23.2
2785 Male, age 18, unknown 22.7
2725 Female, age 75, unknown 21.7
1954 Female, age 42, unknown 21.3
Substantia nigra
nTPM: 21.4
1916 Female, age 42, unknown 24.6
2590 Female, age 75, unknown 24.6
1889 Female, age 72, unknown 24.3
2583 Male, age 75, right hemisphere 21.7
2665 Male, age 74, both hemispheres 21.1
2241 Male, age 72, unknown 20.5
1851 Male, age 51, unknown 20.4
2699 Male, age 18, unknown 20.0
1941 Male, age 53, unknown 19.3
2409 Female, age 72, unknown 17.3
Superior colliculus
nTPM: 22.8
1839 Male, age 51, unknown 26.4
1913 Female, age 42, unknown 25.5
1895 Male, age 76, right hemisphere 25.2
2087 Female, age 72, unknown 24.3
2587 Male, age 74, left hemisphere 24.0
1796 Male, age 53, unknown 22.1
2668 Female, age 75, unknown 21.1
2261 Male, age 18, unknown 20.9
1995 Male, age 72, unknown 20.8
2664 Male, age 75, both hemispheres 17.4
Ventral tegmental area
nTPM: 22.1
2410 Female, age 72, unknown 23.5
1942 Male, age 51, unknown 23.3
1915 Female, age 42, unknown 22.2
2223 Female, age 72, unknown 22.1
2218 Male, age 76, both hemispheres 21.4
2021 Male, age 53, unknown 20.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.7
Samples: 139

Max nTPM: 15.1
Min nTPM: 8.1
Std nTPM: 1.4
Median nTPM: 11.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 15.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 15.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 15.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 14.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 14.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 14.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 14.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 14.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 14.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.2
FF:10158-103A5 76 years, female 47.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 28.9
Min nTPM: 22.2
Sample A Female 22.7
Sample B Female 22.2
Sample C Male 24.5
Sample D Male 28.9
Midbrain
nTPM: 24.5
Samples: 4

Max nTPM: 29.1
Min nTPM: 20.7
Sample A Female 29.1
Sample B Female 20.7
Sample C Male 22.7
Sample D Male 25.6
Periaqueductal gray
nTPM: 23.0
Samples: 3

Max nTPM: 24.5
Min nTPM: 21.6
Sample B Female 21.6
Sample C Male 24.5
Sample D Male 22.9
Superior colliculi
nTPM: 24.1
Samples: 4

Max nTPM: 25.8
Min nTPM: 21.9
Sample A Female 24.7
Sample B Female 23.9
Sample C Male 21.9
Sample D Male 25.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 10.2
Min nTPM: 9.3
Sample A Male 10.0
Sample B Male 9.3
Sample C Female 10.2
Sample D Female 10.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
69838621 Antisense, RP_050310_02_D02, Mouse strain C57BL/6J (56 days, male) 6.0
74819691 Antisense, RP_060315_02_H07, Mouse strain C57BL/6J (56 days, male) 1.4

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