MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.3 nTPM
HPA Brain:26.5 nTPM
GTEx:34.3 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:56.0 nTPM
Mouse:17.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.6
1870 Female, age 42, unknown 22.5
1827 Male, age 72, unknown 20.4
2586 Male, age 75, left hemisphere 20.3
1833 Male, age 53, unknown 18.2
2219 Male, age 76, both hemispheres 18.1
2411 Female, age 72, unknown 18.0
2828 Female, age 72, unknown 16.5
1830 Male, age 51, unknown 15.8
2019 Male, age 18, unknown 15.1
2666 Male, age 74, left hemisphere 11.6
Dorsal raphe nucleus
nTPM: 23.0
2016 Female, age 72, unknown 28.5
1828 Male, age 53, unknown 23.5
2047 Male, age 72, unknown 22.3
2298 Female, age 72, unknown 21.9
2750 Male, age 76, both hemispheres 18.7
Inferior colliculus
nTPM: 19.5
1848 Female, age 42, unknown 21.3
1890 Male, age 53, unknown 19.9
2849 Male, age 72, unknown 19.2
2097 Female, age 72, unknown 17.4
Median raphe nucleus
nTPM: 20.7
2220 Male, age 76, midline 20.7
Periaquaductal grey, anterior
nTPM: 22.2
1947 Male, age 18, unknown 25.3
2502 Female, age 75, unknown 24.5
1795 Male, age 51, unknown 16.8
Periaquaductal grey, dorsal
nTPM: 26.5
1831 Male, age 72, unknown 38.8
1840 Male, age 53, unknown 27.0
2464 Female, age 72, unknown 23.2
2850 Male, age 76, both hemispheres 17.0
Periaquaductal grey, lateral
nTPM: 19.2
2053 Male, age 18, unknown 23.2
2272 Male, age 74, both hemispheres 17.2
2140 Male, age 76, both hemispheres 17.1
Pretectal area
nTPM: 19.1
2667 Female, age 75, unknown 26.7
2407 Male, age 75, both hemispheres 21.4
2316 Male, age 76, right hemisphere 20.7
1817 Female, age 42, unknown 20.3
2825 Male, age 18, unknown 19.9
2007 Male, age 72, unknown 18.8
1944 Female, age 72, unknown 18.7
1816 Male, age 51, unknown 18.5
1815 Male, age 53, unknown 16.6
2273 Male, age 74, both hemispheres 14.6
2224 Female, age 72, unknown 13.8
Red nucleus
nTPM: 16.3
2503 Female, age 72, unknown 24.7
2823 Male, age 76, right hemisphere 18.7
1954 Female, age 42, unknown 18.1
1865 Male, age 51, unknown 17.8
1821 Female, age 72, unknown 17.4
1904 Male, age 53, unknown 17.2
2769 Male, age 72, unknown 15.8
2227 Male, age 72, unknown 15.5
2584 Male, age 75, left hemisphere 15.1
2785 Male, age 18, unknown 13.4
2588 Male, age 74, left hemisphere 11.3
2725 Female, age 75, unknown 10.4
Substantia nigra
nTPM: 23.9
2409 Female, age 72, unknown 47.4
1916 Female, age 42, unknown 29.4
1851 Male, age 51, unknown 23.3
2699 Male, age 18, unknown 23.3
1889 Female, age 72, unknown 21.6
2241 Male, age 72, unknown 21.5
1941 Male, age 53, unknown 20.1
2583 Male, age 75, right hemisphere 18.1
2590 Female, age 75, unknown 17.4
2665 Male, age 74, both hemispheres 17.1
Superior colliculus
nTPM: 19.8
1895 Male, age 76, right hemisphere 27.2
1839 Male, age 51, unknown 26.8
2668 Female, age 75, unknown 23.9
1913 Female, age 42, unknown 21.4
2664 Male, age 75, both hemispheres 18.9
2261 Male, age 18, unknown 17.1
1796 Male, age 53, unknown 17.0
2587 Male, age 74, left hemisphere 16.9
2087 Female, age 72, unknown 16.3
1995 Male, age 72, unknown 12.1
Ventral tegmental area
nTPM: 20.5
1915 Female, age 42, unknown 28.0
2021 Male, age 53, unknown 23.1
2218 Male, age 76, both hemispheres 20.2
1942 Male, age 51, unknown 18.5
2223 Female, age 72, unknown 17.0
2410 Female, age 72, unknown 16.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.3
Samples: 139

Max nTPM: 84.0
Min nTPM: 22.1
Std nTPM: 8.9
Median nTPM: 32.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 84.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 70.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 58.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 58.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 55.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 51.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 51.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 50.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 49.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 48.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.3
FF:10158-103A5 76 years, female 31.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.1
Samples: 4

Max nTPM: 60.3
Min nTPM: 44.6
Sample A Female 44.6
Sample B Female 60.3
Sample C Male 55.1
Sample D Male 56.3
Midbrain
nTPM: 52.0
Samples: 4

Max nTPM: 63.7
Min nTPM: 37.4
Sample A Female 37.4
Sample B Female 54.2
Sample C Male 52.7
Sample D Male 63.7
Periaqueductal gray
nTPM: 56.0
Samples: 3

Max nTPM: 58.8
Min nTPM: 51.1
Sample B Female 58.2
Sample C Male 58.8
Sample D Male 51.1
Superior colliculi
nTPM: 55.9
Samples: 4

Max nTPM: 64.0
Min nTPM: 47.2
Sample A Female 58.6
Sample B Female 64.0
Sample C Male 47.2
Sample D Male 53.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 19.1
Min nTPM: 15.9
Sample A Male 17.0
Sample B Male 18.8
Sample C Female 19.1
Sample D Female 15.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69134634 Antisense, RP_050321_03_C01, Mouse strain C57BL/6J (56 days, male) 0.1

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