MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.2 nTPM
HPA Brain:60.9 nTPM
GTEx:28.2 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:51.9 nTPM
Mouse:79.9 nTPM
Allen mouse:13.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.5
2219 Male, age 76, both hemispheres 70.6
2666 Male, age 74, left hemisphere 56.2
2586 Male, age 75, left hemisphere 54.7
2411 Female, age 72, unknown 53.0
1827 Male, age 72, unknown 52.0
2019 Male, age 18, unknown 46.5
1833 Male, age 53, unknown 46.0
2828 Female, age 72, unknown 45.2
1830 Male, age 51, unknown 40.4
1870 Female, age 42, unknown 40.3
Dorsal raphe nucleus
nTPM: 37.8
2298 Female, age 72, unknown 43.0
2047 Male, age 72, unknown 38.0
1828 Male, age 53, unknown 37.7
2750 Male, age 76, both hemispheres 37.4
2016 Female, age 72, unknown 32.8
Inferior colliculus
nTPM: 51.6
2097 Female, age 72, unknown 58.7
1890 Male, age 53, unknown 51.7
1848 Female, age 42, unknown 48.0
2849 Male, age 72, unknown 48.0
Median raphe nucleus
nTPM: 48.7
2220 Male, age 76, midline 48.7
Periaquaductal grey, anterior
nTPM: 54.0
2502 Female, age 75, unknown 60.0
1795 Male, age 51, unknown 52.3
1947 Male, age 18, unknown 49.7
Periaquaductal grey, dorsal
nTPM: 43.3
1831 Male, age 72, unknown 55.3
1840 Male, age 53, unknown 43.1
2464 Female, age 72, unknown 37.8
2850 Male, age 76, both hemispheres 37.1
Periaquaductal grey, lateral
nTPM: 33.5
2053 Male, age 18, unknown 39.9
2140 Male, age 76, both hemispheres 35.2
2272 Male, age 74, both hemispheres 25.5
Pretectal area
nTPM: 52.9
1944 Female, age 72, unknown 70.9
2007 Male, age 72, unknown 67.3
1816 Male, age 51, unknown 66.8
2667 Female, age 75, unknown 65.9
1817 Female, age 42, unknown 61.0
1815 Male, age 53, unknown 53.7
2224 Female, age 72, unknown 46.7
2316 Male, age 76, right hemisphere 45.1
2825 Male, age 18, unknown 43.3
2407 Male, age 75, both hemispheres 38.6
2273 Male, age 74, both hemispheres 22.6
Red nucleus
nTPM: 39.6
2584 Male, age 75, left hemisphere 52.4
2785 Male, age 18, unknown 44.3
1821 Female, age 72, unknown 42.2
2823 Male, age 76, right hemisphere 41.1
1954 Female, age 42, unknown 40.9
1865 Male, age 51, unknown 39.2
2769 Male, age 72, unknown 39.1
2588 Male, age 74, left hemisphere 38.9
1904 Male, age 53, unknown 38.5
2227 Male, age 72, unknown 36.6
2503 Female, age 72, unknown 32.9
2725 Female, age 75, unknown 29.6
Substantia nigra
nTPM: 60.9
1916 Female, age 42, unknown 93.1
2665 Male, age 74, both hemispheres 82.6
1941 Male, age 53, unknown 68.4
1851 Male, age 51, unknown 67.1
1889 Female, age 72, unknown 63.9
2409 Female, age 72, unknown 57.6
2699 Male, age 18, unknown 57.1
2241 Male, age 72, unknown 54.3
2583 Male, age 75, right hemisphere 36.9
2590 Female, age 75, unknown 28.1
Superior colliculus
nTPM: 51.0
2668 Female, age 75, unknown 91.0
2087 Female, age 72, unknown 58.7
1895 Male, age 76, right hemisphere 54.9
1796 Male, age 53, unknown 54.4
2664 Male, age 75, both hemispheres 51.8
2261 Male, age 18, unknown 49.3
1839 Male, age 51, unknown 46.3
2587 Male, age 74, left hemisphere 35.5
1913 Female, age 42, unknown 34.7
1995 Male, age 72, unknown 33.2
Ventral tegmental area
nTPM: 55.3
2218 Male, age 76, both hemispheres 69.8
2410 Female, age 72, unknown 66.0
1915 Female, age 42, unknown 63.0
1942 Male, age 51, unknown 47.4
2223 Female, age 72, unknown 43.4
2021 Male, age 53, unknown 42.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.2
Samples: 139

Max nTPM: 88.1
Min nTPM: 5.8
Std nTPM: 15.6
Median nTPM: 24.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 79.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 61.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 59.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 57.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 55.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 55.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 53.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 53.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 52.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 51.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.4
Samples: 4

Max nTPM: 49.2
Min nTPM: 24.5
Sample A Female 45.9
Sample B Female 25.9
Sample C Male 49.2
Sample D Male 24.5
Midbrain
nTPM: 47.3
Samples: 4

Max nTPM: 80.1
Min nTPM: 21.4
Sample A Female 21.4
Sample B Female 31.3
Sample C Male 80.1
Sample D Male 56.3
Periaqueductal gray
nTPM: 32.4
Samples: 3

Max nTPM: 37.7
Min nTPM: 27.9
Sample B Female 31.5
Sample C Male 37.7
Sample D Male 27.9
Superior colliculi
nTPM: 51.9
Samples: 4

Max nTPM: 79.0
Min nTPM: 26.5
Sample A Female 49.5
Sample B Female 26.5
Sample C Male 79.0
Sample D Male 52.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.9
Samples: 4

Max nTPM: 82.8
Min nTPM: 72.8
Sample A Male 82.8
Sample B Male 72.8
Sample C Female 81.8
Sample D Female 82.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.7
68798974 Antisense, RP_050217_01_G02, Mouse strain C57BL/6J (56 days, male) 13.7

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