HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:70.6 nTPM
HPA Brain:93.0 nTPM
GTEx:70.6 nTPM
FANTOM5:326.2 Scaled Tags Per Million
Pig:54.9 nTPM
Mouse:87.0 nTPM
Allen mouse:17.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040619Antibody HPA053987Antibody CAB033836
Glial cells LowHighMedium
Neuronal cells MediumNot detectedNot detected







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 93.0
Sample id Sample description nTPM
Hippocampus
nTPM: 80.5
2529 Female, age 94, left hemisphere 93.3
2621 Female, age 67, right hemisphere 88.2
1911 Female, age 85, right hemisphere 84.1
1898 Male, age 80, left hemisphere 80.3
1855 Male, age 76, left hemisphere 77.1
2148 Female, age 91, left hemisphere 60.0
Dentate gyrus
nTPM: 72.9
2530 Female, age 94, left hemisphere 102.1
2010 Male, age 76, both hemispheres 90.5
2246 Female, age 85, both hemispheres 68.0
2531 Female, age 67, both hemispheres 64.8
2528 Male, age 74, both hemispheres 57.9
1927 Female, age 91, both hemispheres 54.2
Entorhinal gyrus
nTPM: 83.6
2117 Female, age 91, right hemisphere 100.0
1938 Female, age 85, left hemisphere 82.9
2686 Male, age 75, right hemisphere 82.9
2764 Male, age 80, right hemisphere 82.7
2613 Female, age 94, left hemisphere 80.9
1787 Male, age 76, left hemisphere 71.8
Hippocampus, CA1
nTPM: 72.4
2527 Male, age 74, both hemispheres 83.5
2749 Male, age 80, left hemisphere 82.9
1873 Female, age 85, both hemispheres 75.9
2082 Female, age 91, right hemisphere 60.4
2045 Male, age 76, both hemispheres 59.3
Hippocampus, CA2
nTPM: 76.3
2437 Female, age 94, left hemisphere 83.8
1963 Male, age 80, left hemisphere 81.9
2249 Male, age 74, both hemispheres 77.7
1940 Female, age 85, left hemisphere 75.1
1892 Male, age 76, both hemispheres 73.6
2113 Female, age 91, right hemisphere 65.9
Hippocampus, CA3
nTPM: 67.9
1891 Female, age 85, both hemispheres 83.1
1867 Male, age 76, both hemispheres 78.6
2137 Male, age 80, left hemisphere 64.0
2436 Male, age 74, both hemispheres 62.5
2620 Female, age 94, left hemisphere 60.6
2861 Female, age 67, both hemispheres 58.5
Parahippocampal cortex
nTPM: 77.0
2532 Female, age 72, left hemisphere 89.2
2245 Female, age 91, both hemispheres 83.2
2018 Male, age 76, both hemispheres 82.4
1850 Male, age 80, both hemispheres 82.0
1933 Female, age 85, both hemispheres 80.4
2692 Male, age 74, both hemispheres 79.7
1990 Female, age 91, right hemisphere 69.9
2622 Female, age 67, right hemisphere 69.4
2250 Female, age 67, right hemisphere 68.1
2693 Female, age 94, both hemispheres 65.7
Perirhinal gyrus
nTPM: 69.3
2521 Female, age 94, right hemisphere 72.7
1794 Male, age 80, right hemisphere 71.1
1841 Female, age 85, right hemisphere 69.0
2848 Male, age 76, right hemisphere 67.4
1847 Female, age 91, left hemisphere 66.1
Subiculum
nTPM: 93.0
2438 Female, age 94, left hemisphere 112.4
2042 Male, age 76, both hemispheres 111.9
1901 Male, age 80, both hemispheres 97.0
1977 Female, age 85, both hemispheres 87.2
2619 Male, age 74, both hemispheres 83.2
2729 Female, age 91, right hemisphere 66.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 70.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 70.6
Samples: 197

Max nTPM: 144.6
Min nTPM: 24.1
Std nTPM: 23.9
Median nTPM: 67.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 144.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 140.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 133.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 130.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 124.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 118.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 118.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 118.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 117.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 117.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 115.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 326.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 326.2
FF:10169-103B7 60 years, female 371.8
FF:10153-102I9 76 years, female 280.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 54.9
Pig sample Sample description nTPM
Subiculum
nTPM: 48.3
Samples: 4

Max nTPM: 54.3
Min nTPM: 44.8
Sample A Female 54.3
Sample B Female 46.5
Sample C Male 44.8
Sample D Male 47.6
Dorsal hippocampus
nTPM: 54.9
Samples: 4

Max nTPM: 65.1
Min nTPM: 45.3
Sample A Female 65.1
Sample B Female 51.2
Sample C Male 58.1
Sample D Male 45.3
Entorhinal cortex
nTPM: 45.5
Samples: 4

Max nTPM: 51.1
Min nTPM: 42.1
Sample A Female 42.3
Sample B Female 51.1
Sample C Male 46.3
Sample D Male 42.1
Ventral hippocampus
nTPM: 47.2
Samples: 4

Max nTPM: 51.2
Min nTPM: 42.0
Sample A Female 51.2
Sample B Female 44.3
Sample C Male 42.0
Sample D Male 51.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 87.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 85.7
Samples: 4

Max nTPM: 90.4
Min nTPM: 78.2
Sample A Male 84.8
Sample B Male 89.2
Sample C Female 90.4
Sample D Female 78.2
Hippocampal formation
nTPM: 87.0
Samples: 4

Max nTPM: 96.5
Min nTPM: 81.0
Sample A Male 96.5
Sample B Male 87.4
Sample C Female 81.0
Sample D Female 83.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.2
81600138 Antisense, RP_080312_03_A04, Mouse strain C57BL/6J (56 days, male) 18.6
69627015 Antisense, RP_050428_01_G01, Mouse strain C57BL/6J (56 days, male) 15.8

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