MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:94.1 nTPM
HPA Brain:149.6 nTPM
GTEx:94.1 nTPM
FANTOM5:402.4 Scaled Tags Per Million
Pig:80.0 nTPM
Mouse:107.8 nTPM
Allen mouse:14.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 149.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.5
2411 Female, age 72, unknown 151.7
1870 Female, age 42, unknown 147.4
1833 Male, age 53, unknown 136.3
2019 Male, age 18, unknown 133.2
1830 Male, age 51, unknown 128.7
2828 Female, age 72, unknown 110.5
1827 Male, age 72, unknown 101.3
2219 Male, age 76, both hemispheres 100.7
2666 Male, age 74, left hemisphere 98.0
2586 Male, age 75, left hemisphere 67.0
Dorsal raphe nucleus
nTPM: 103.3
2750 Male, age 76, both hemispheres 157.7
1828 Male, age 53, unknown 97.8
2016 Female, age 72, unknown 93.1
2047 Male, age 72, unknown 90.5
2298 Female, age 72, unknown 77.5
Inferior colliculus
nTPM: 88.9
1890 Male, age 53, unknown 95.4
1848 Female, age 42, unknown 92.7
2097 Female, age 72, unknown 85.0
2849 Male, age 72, unknown 82.6
Median raphe nucleus
nTPM: 123.1
2220 Male, age 76, midline 123.1
Periaquaductal grey, anterior
nTPM: 83.3
1947 Male, age 18, unknown 95.4
2502 Female, age 75, unknown 82.9
1795 Male, age 51, unknown 71.4
Periaquaductal grey, dorsal
nTPM: 78.3
2464 Female, age 72, unknown 90.9
1831 Male, age 72, unknown 84.0
2850 Male, age 76, both hemispheres 78.5
1840 Male, age 53, unknown 59.8
Periaquaductal grey, lateral
nTPM: 82.4
2053 Male, age 18, unknown 89.6
2272 Male, age 74, both hemispheres 82.2
2140 Male, age 76, both hemispheres 75.4
Pretectal area
nTPM: 96.9
1815 Male, age 53, unknown 113.6
1817 Female, age 42, unknown 109.2
2007 Male, age 72, unknown 104.2
2667 Female, age 75, unknown 103.9
2316 Male, age 76, right hemisphere 102.9
2407 Male, age 75, both hemispheres 97.9
1944 Female, age 72, unknown 93.0
1816 Male, age 51, unknown 90.8
2825 Male, age 18, unknown 86.0
2224 Female, age 72, unknown 82.0
2273 Male, age 74, both hemispheres 81.9
Red nucleus
nTPM: 149.6
1904 Male, age 53, unknown 181.9
1865 Male, age 51, unknown 179.7
1821 Female, age 72, unknown 174.4
1954 Female, age 42, unknown 164.4
2823 Male, age 76, right hemisphere 159.5
2503 Female, age 72, unknown 158.4
2227 Male, age 72, unknown 140.6
2769 Male, age 72, unknown 140.6
2725 Female, age 75, unknown 134.6
2785 Male, age 18, unknown 131.2
2588 Male, age 74, left hemisphere 128.8
2584 Male, age 75, left hemisphere 100.6
Substantia nigra
nTPM: 105.1
1916 Female, age 42, unknown 120.9
1851 Male, age 51, unknown 116.3
1889 Female, age 72, unknown 112.6
2590 Female, age 75, unknown 110.6
2409 Female, age 72, unknown 110.3
2241 Male, age 72, unknown 107.9
2699 Male, age 18, unknown 103.1
1941 Male, age 53, unknown 94.4
2665 Male, age 74, both hemispheres 88.8
2583 Male, age 75, right hemisphere 85.7
Superior colliculus
nTPM: 99.7
1913 Female, age 42, unknown 132.0
2587 Male, age 74, left hemisphere 120.1
1995 Male, age 72, unknown 119.6
1895 Male, age 76, right hemisphere 110.0
2668 Female, age 75, unknown 93.7
1839 Male, age 51, unknown 92.9
1796 Male, age 53, unknown 89.7
2261 Male, age 18, unknown 85.5
2087 Female, age 72, unknown 85.3
2664 Male, age 75, both hemispheres 67.8
Ventral tegmental area
nTPM: 115.7
2223 Female, age 72, unknown 155.2
2410 Female, age 72, unknown 123.2
2218 Male, age 76, both hemispheres 113.5
1915 Female, age 42, unknown 107.6
2021 Male, age 53, unknown 97.9
1942 Male, age 51, unknown 96.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 94.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.1
Samples: 139

Max nTPM: 202.2
Min nTPM: 45.6
Std nTPM: 29.5
Median nTPM: 88.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 202.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 200.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 187.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 185.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 179.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 171.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 165.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 154.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 145.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 138.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 137.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 402.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 402.4
FF:10158-103A5 76 years, female 402.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.8
Samples: 4

Max nTPM: 81.0
Min nTPM: 61.6
Sample A Female 80.1
Sample B Female 61.6
Sample C Male 64.4
Sample D Male 81.0
Midbrain
nTPM: 80.0
Samples: 4

Max nTPM: 127.6
Min nTPM: 55.2
Sample A Female 127.6
Sample B Female 75.7
Sample C Male 61.6
Sample D Male 55.2
Periaqueductal gray
nTPM: 58.4
Samples: 3

Max nTPM: 62.8
Min nTPM: 54.0
Sample B Female 62.8
Sample C Male 58.4
Sample D Male 54.0
Superior colliculi
nTPM: 67.4
Samples: 4

Max nTPM: 74.0
Min nTPM: 58.2
Sample A Female 70.2
Sample B Female 58.2
Sample C Male 74.0
Sample D Male 67.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 107.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.9
Samples: 4

Max nTPM: 109.5
Min nTPM: 104.3
Sample A Male 104.3
Sample B Male 109.3
Sample C Female 108.3
Sample D Female 109.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.1
81600138 Antisense, RP_080312_03_A04, Mouse strain C57BL/6J (56 days, male) 14.3
69627015 Antisense, RP_050428_01_G01, Mouse strain C57BL/6J (56 days, male) 13.9

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