MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.8 nTPM
HPA Brain:105.0 nTPM
GTEx:36.8 nTPM
FANTOM5:85.5 Scaled Tags Per Million
Pig:107.9 nTPM
Mouse:43.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 105.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.1
2586 Male, age 75, left hemisphere 107.0
2828 Female, age 72, unknown 102.0
1870 Female, age 42, unknown 77.4
1833 Male, age 53, unknown 71.7
1827 Male, age 72, unknown 66.4
1830 Male, age 51, unknown 64.0
2411 Female, age 72, unknown 62.5
2666 Male, age 74, left hemisphere 57.6
2219 Male, age 76, both hemispheres 56.0
2019 Male, age 18, unknown 45.9
Dorsal raphe nucleus
nTPM: 105.0
2047 Male, age 72, unknown 130.5
2016 Female, age 72, unknown 116.1
1828 Male, age 53, unknown 104.0
2298 Female, age 72, unknown 96.9
2750 Male, age 76, both hemispheres 77.6
Inferior colliculus
nTPM: 91.2
1848 Female, age 42, unknown 100.2
2849 Male, age 72, unknown 91.8
1890 Male, age 53, unknown 88.8
2097 Female, age 72, unknown 84.1
Median raphe nucleus
nTPM: 95.1
2220 Male, age 76, midline 95.1
Periaquaductal grey, anterior
nTPM: 93.6
2502 Female, age 75, unknown 95.6
1795 Male, age 51, unknown 92.8
1947 Male, age 18, unknown 92.4
Periaquaductal grey, dorsal
nTPM: 92.0
1840 Male, age 53, unknown 108.3
2850 Male, age 76, both hemispheres 99.0
2464 Female, age 72, unknown 84.1
1831 Male, age 72, unknown 76.5
Periaquaductal grey, lateral
nTPM: 97.0
2140 Male, age 76, both hemispheres 106.5
2053 Male, age 18, unknown 103.9
2272 Male, age 74, both hemispheres 80.4
Pretectal area
nTPM: 73.5
2273 Male, age 74, both hemispheres 114.6
2825 Male, age 18, unknown 99.9
2224 Female, age 72, unknown 86.6
2316 Male, age 76, right hemisphere 82.4
2667 Female, age 75, unknown 76.7
2407 Male, age 75, both hemispheres 70.1
1944 Female, age 72, unknown 68.2
1816 Male, age 51, unknown 60.9
1815 Male, age 53, unknown 53.2
1817 Female, age 42, unknown 52.2
2007 Male, age 72, unknown 43.7
Red nucleus
nTPM: 65.3
2769 Male, age 72, unknown 81.7
2227 Male, age 72, unknown 79.9
2503 Female, age 72, unknown 78.1
1954 Female, age 42, unknown 76.7
2725 Female, age 75, unknown 72.3
2588 Male, age 74, left hemisphere 66.5
1821 Female, age 72, unknown 66.4
1904 Male, age 53, unknown 61.3
1865 Male, age 51, unknown 54.9
2584 Male, age 75, left hemisphere 52.3
2823 Male, age 76, right hemisphere 48.5
2785 Male, age 18, unknown 44.6
Substantia nigra
nTPM: 77.1
2699 Male, age 18, unknown 110.2
1916 Female, age 42, unknown 101.7
1851 Male, age 51, unknown 84.6
2409 Female, age 72, unknown 75.3
2241 Male, age 72, unknown 71.7
1941 Male, age 53, unknown 71.5
2590 Female, age 75, unknown 68.8
1889 Female, age 72, unknown 65.5
2583 Male, age 75, right hemisphere 64.5
2665 Male, age 74, both hemispheres 57.4
Superior colliculus
nTPM: 74.5
2664 Male, age 75, both hemispheres 102.5
1796 Male, age 53, unknown 82.7
1839 Male, age 51, unknown 82.0
2587 Male, age 74, left hemisphere 77.5
1995 Male, age 72, unknown 76.3
2261 Male, age 18, unknown 71.8
1913 Female, age 42, unknown 70.8
2668 Female, age 75, unknown 64.6
1895 Male, age 76, right hemisphere 58.6
2087 Female, age 72, unknown 58.2
Ventral tegmental area
nTPM: 81.2
1915 Female, age 42, unknown 97.6
1942 Male, age 51, unknown 94.7
2021 Male, age 53, unknown 86.3
2223 Female, age 72, unknown 72.5
2410 Female, age 72, unknown 69.8
2218 Male, age 76, both hemispheres 66.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.8
Samples: 139

Max nTPM: 81.0
Min nTPM: 8.9
Std nTPM: 13.2
Median nTPM: 34.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 81.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 74.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 73.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 63.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 62.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 60.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 60.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 59.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 59.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 59.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 58.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.5
FF:10158-103A5 76 years, female 85.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 107.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.0
Samples: 4

Max nTPM: 94.7
Min nTPM: 74.3
Sample A Female 94.7
Sample B Female 80.8
Sample C Male 90.1
Sample D Male 74.3
Midbrain
nTPM: 107.9
Samples: 4

Max nTPM: 209.4
Min nTPM: 67.8
Sample A Female 209.4
Sample B Female 75.9
Sample C Male 78.5
Sample D Male 67.8
Periaqueductal gray
nTPM: 89.4
Samples: 3

Max nTPM: 94.0
Min nTPM: 83.3
Sample B Female 83.3
Sample C Male 94.0
Sample D Male 90.9
Superior colliculi
nTPM: 81.8
Samples: 4

Max nTPM: 91.2
Min nTPM: 77.3
Sample A Female 91.2
Sample B Female 80.8
Sample C Male 77.3
Sample D Male 78.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.9
Samples: 4

Max nTPM: 45.9
Min nTPM: 42.8
Sample A Male 42.8
Sample B Male 45.9
Sample C Female 43.7
Sample D Female 43.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
72472778 Antisense, RP_051101_02_D10, Mouse strain C57BL/6J (56 days, male) 0.1
69626546 Antisense, RP_050426_04_H01, Mouse strain C57BL/6J (56 days, male) 0.0

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