MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.5 nTPM
HPA Brain:89.5 nTPM
GTEx:21.5 nTPM
FANTOM5:25.9 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:55.0 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.6
2586 Male, age 75, left hemisphere 103.7
2828 Female, age 72, unknown 63.2
1827 Male, age 72, unknown 54.4
1833 Male, age 53, unknown 46.9
2411 Female, age 72, unknown 46.9
2666 Male, age 74, left hemisphere 44.0
2219 Male, age 76, both hemispheres 43.5
1830 Male, age 51, unknown 43.4
1870 Female, age 42, unknown 43.3
2019 Male, age 18, unknown 26.7
Dorsal raphe nucleus
nTPM: 62.3
2047 Male, age 72, unknown 73.3
2016 Female, age 72, unknown 72.8
1828 Male, age 53, unknown 66.1
2298 Female, age 72, unknown 60.8
2750 Male, age 76, both hemispheres 38.4
Inferior colliculus
nTPM: 62.4
1848 Female, age 42, unknown 68.0
1890 Male, age 53, unknown 65.1
2849 Male, age 72, unknown 59.6
2097 Female, age 72, unknown 56.7
Median raphe nucleus
nTPM: 61.3
2220 Male, age 76, midline 61.3
Periaquaductal grey, anterior
nTPM: 89.5
1947 Male, age 18, unknown 143.3
1795 Male, age 51, unknown 64.7
2502 Female, age 75, unknown 60.4
Periaquaductal grey, dorsal
nTPM: 62.1
2850 Male, age 76, both hemispheres 80.9
1840 Male, age 53, unknown 73.9
2464 Female, age 72, unknown 54.1
1831 Male, age 72, unknown 39.3
Periaquaductal grey, lateral
nTPM: 60.5
2140 Male, age 76, both hemispheres 82.6
2053 Male, age 18, unknown 57.2
2272 Male, age 74, both hemispheres 41.8
Pretectal area
nTPM: 51.3
2825 Male, age 18, unknown 70.8
2667 Female, age 75, unknown 68.3
2273 Male, age 74, both hemispheres 63.0
2316 Male, age 76, right hemisphere 60.7
2407 Male, age 75, both hemispheres 56.6
2224 Female, age 72, unknown 52.0
1816 Male, age 51, unknown 41.9
1815 Male, age 53, unknown 39.8
1817 Female, age 42, unknown 39.4
1944 Female, age 72, unknown 37.9
2007 Male, age 72, unknown 33.6
Red nucleus
nTPM: 48.6
1954 Female, age 42, unknown 60.5
2227 Male, age 72, unknown 54.5
1821 Female, age 72, unknown 54.1
1865 Male, age 51, unknown 53.5
2769 Male, age 72, unknown 52.9
2725 Female, age 75, unknown 50.6
2503 Female, age 72, unknown 49.3
1904 Male, age 53, unknown 48.9
2588 Male, age 74, left hemisphere 48.5
2584 Male, age 75, left hemisphere 47.4
2823 Male, age 76, right hemisphere 36.8
2785 Male, age 18, unknown 26.6
Substantia nigra
nTPM: 67.0
1916 Female, age 42, unknown 112.1
2241 Male, age 72, unknown 84.1
1851 Male, age 51, unknown 79.1
2699 Male, age 18, unknown 75.7
2583 Male, age 75, right hemisphere 59.9
2665 Male, age 74, both hemispheres 59.8
2590 Female, age 75, unknown 52.7
2409 Female, age 72, unknown 51.8
1889 Female, age 72, unknown 49.2
1941 Male, age 53, unknown 45.4
Superior colliculus
nTPM: 55.6
2664 Male, age 75, both hemispheres 80.0
1796 Male, age 53, unknown 71.3
2668 Female, age 75, unknown 62.0
2261 Male, age 18, unknown 61.0
1839 Male, age 51, unknown 58.1
1995 Male, age 72, unknown 56.7
2087 Female, age 72, unknown 50.1
2587 Male, age 74, left hemisphere 41.8
1913 Female, age 42, unknown 40.6
1895 Male, age 76, right hemisphere 34.5
Ventral tegmental area
nTPM: 57.9
1942 Male, age 51, unknown 66.0
1915 Female, age 42, unknown 65.3
2410 Female, age 72, unknown 58.0
2021 Male, age 53, unknown 55.5
2223 Female, age 72, unknown 53.8
2218 Male, age 76, both hemispheres 48.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.5
Samples: 139

Max nTPM: 66.8
Min nTPM: 1.7
Std nTPM: 10.4
Median nTPM: 19.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 66.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 54.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 48.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 44.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 44.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 43.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 41.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 41.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 38.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 36.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 36.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.9
FF:10158-103A5 76 years, female 25.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.0
Samples: 4

Max nTPM: 37.1
Min nTPM: 12.0
Sample A Female 28.4
Sample B Female 18.4
Sample C Male 37.1
Sample D Male 12.0
Midbrain
nTPM: 18.0
Samples: 4

Max nTPM: 30.6
Min nTPM: 10.8
Sample A Female 10.8
Sample B Female 14.1
Sample C Male 16.6
Sample D Male 30.6
Periaqueductal gray
nTPM: 8.4
Samples: 3

Max nTPM: 9.9
Min nTPM: 6.8
Sample B Female 9.9
Sample C Male 8.5
Sample D Male 6.8
Superior colliculi
nTPM: 21.6
Samples: 4

Max nTPM: 27.8
Min nTPM: 16.5
Sample A Female 27.8
Sample B Female 16.5
Sample C Male 21.3
Sample D Male 20.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.0
Samples: 4

Max nTPM: 57.8
Min nTPM: 50.0
Sample A Male 50.0
Sample B Male 56.6
Sample C Female 57.8
Sample D Female 55.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
68192998 Antisense, RP_040922_01_B08, Mouse strain C57BL/6J (56 days, male) 6.7
79567501 Antisense, RP_071204_01_E09, Mouse strain C57BL/6J (56 days, male) 3.7
73 Antisense, RP_Baylor_103353, Mouse strain C57BL/6J (56 days, male) 0.6

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