MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:121.3 nTPM
HPA Brain:97.8 nTPM
GTEx:121.3 nTPM
FANTOM5:65.0 Scaled Tags Per Million
Pig:122.3 nTPM
Mouse:325.3 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.6
2219 Male, age 76, both hemispheres 88.1
1827 Male, age 72, unknown 85.6
2411 Female, age 72, unknown 85.5
2019 Male, age 18, unknown 75.5
1870 Female, age 42, unknown 66.2
2828 Female, age 72, unknown 65.5
1833 Male, age 53, unknown 63.1
1830 Male, age 51, unknown 55.0
2666 Male, age 74, left hemisphere 51.4
2586 Male, age 75, left hemisphere 40.6
Dorsal raphe nucleus
nTPM: 84.6
2298 Female, age 72, unknown 117.7
2047 Male, age 72, unknown 83.3
1828 Male, age 53, unknown 80.7
2750 Male, age 76, both hemispheres 80.0
2016 Female, age 72, unknown 61.1
Inferior colliculus
nTPM: 68.5
2097 Female, age 72, unknown 81.8
1848 Female, age 42, unknown 69.6
1890 Male, age 53, unknown 66.9
2849 Male, age 72, unknown 55.6
Median raphe nucleus
nTPM: 89.2
2220 Male, age 76, midline 89.2
Periaquaductal grey, anterior
nTPM: 75.8
1947 Male, age 18, unknown 88.8
1795 Male, age 51, unknown 77.6
2502 Female, age 75, unknown 60.8
Periaquaductal grey, dorsal
nTPM: 63.5
1840 Male, age 53, unknown 74.5
2464 Female, age 72, unknown 62.3
2850 Male, age 76, both hemispheres 60.7
1831 Male, age 72, unknown 56.4
Periaquaductal grey, lateral
nTPM: 68.1
2272 Male, age 74, both hemispheres 93.8
2053 Male, age 18, unknown 55.4
2140 Male, age 76, both hemispheres 55.2
Pretectal area
nTPM: 81.8
1816 Male, age 51, unknown 100.3
2273 Male, age 74, both hemispheres 97.6
1944 Female, age 72, unknown 97.3
2007 Male, age 72, unknown 93.6
1817 Female, age 42, unknown 91.7
2224 Female, age 72, unknown 88.9
2667 Female, age 75, unknown 85.2
1815 Male, age 53, unknown 79.4
2825 Male, age 18, unknown 61.5
2316 Male, age 76, right hemisphere 57.6
2407 Male, age 75, both hemispheres 46.2
Red nucleus
nTPM: 58.5
1821 Female, age 72, unknown 78.4
2725 Female, age 75, unknown 77.5
2588 Male, age 74, left hemisphere 66.0
2785 Male, age 18, unknown 64.4
2503 Female, age 72, unknown 57.5
2823 Male, age 76, right hemisphere 56.8
1954 Female, age 42, unknown 55.1
1865 Male, age 51, unknown 52.4
2227 Male, age 72, unknown 51.3
2769 Male, age 72, unknown 50.6
1904 Male, age 53, unknown 47.5
2584 Male, age 75, left hemisphere 44.8
Substantia nigra
nTPM: 97.8
1916 Female, age 42, unknown 156.5
2241 Male, age 72, unknown 145.9
1851 Male, age 51, unknown 114.0
1941 Male, age 53, unknown 110.8
1889 Female, age 72, unknown 97.1
2409 Female, age 72, unknown 87.5
2699 Male, age 18, unknown 81.7
2590 Female, age 75, unknown 71.8
2665 Male, age 74, both hemispheres 65.2
2583 Male, age 75, right hemisphere 47.2
Superior colliculus
nTPM: 65.6
1895 Male, age 76, right hemisphere 84.8
2087 Female, age 72, unknown 80.5
1796 Male, age 53, unknown 76.9
2261 Male, age 18, unknown 73.1
2587 Male, age 74, left hemisphere 71.8
2668 Female, age 75, unknown 70.3
1839 Male, age 51, unknown 58.6
1913 Female, age 42, unknown 51.6
1995 Male, age 72, unknown 45.6
2664 Male, age 75, both hemispheres 42.4
Ventral tegmental area
nTPM: 86.2
2410 Female, age 72, unknown 107.0
1915 Female, age 42, unknown 105.5
2218 Male, age 76, both hemispheres 102.7
1942 Male, age 51, unknown 74.5
2021 Male, age 53, unknown 64.9
2223 Female, age 72, unknown 62.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 121.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 121.3
Samples: 139

Max nTPM: 344.4
Min nTPM: 60.5
Std nTPM: 57.9
Median nTPM: 102.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 344.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 339.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 323.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 321.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 265.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 255.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 238.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 230.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 210.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 205.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 205.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.0
FF:10158-103A5 76 years, female 65.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 122.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 122.3
Samples: 4

Max nTPM: 170.7
Min nTPM: 86.1
Sample A Female 170.7
Sample B Female 100.3
Sample C Male 132.2
Sample D Male 86.1
Midbrain
nTPM: 118.9
Samples: 4

Max nTPM: 150.5
Min nTPM: 97.2
Sample A Female 150.5
Sample B Female 109.8
Sample C Male 118.1
Sample D Male 97.2
Periaqueductal gray
nTPM: 96.5
Samples: 3

Max nTPM: 110.7
Min nTPM: 85.8
Sample B Female 93.0
Sample C Male 110.7
Sample D Male 85.8
Superior colliculi
nTPM: 119.7
Samples: 4

Max nTPM: 144.3
Min nTPM: 97.3
Sample A Female 131.7
Sample B Female 97.3
Sample C Male 144.3
Sample D Male 105.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 325.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 325.3
Samples: 4

Max nTPM: 332.3
Min nTPM: 317.6
Sample A Male 322.5
Sample B Male 328.9
Sample C Female 317.6
Sample D Female 332.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
1550 Antisense, RP_040420_01_C03, Mouse strain C57BL/6J (56 days, male) 6.8
1549 Antisense, RP_040420_01_C03, Mouse strain C57BL/6J (56 days, male) 5.4

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