MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.3 nTPM
HPA Brain:69.9 nTPM
GTEx:33.3 nTPM
FANTOM5:97.7 Scaled Tags Per Million
Pig:41.2 nTPM
Mouse:110.2 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.6
1827 Male, age 72, unknown 71.1
2586 Male, age 75, left hemisphere 71.1
1870 Female, age 42, unknown 69.5
2411 Female, age 72, unknown 67.9
2019 Male, age 18, unknown 61.0
2828 Female, age 72, unknown 58.5
1833 Male, age 53, unknown 58.3
2666 Male, age 74, left hemisphere 57.9
1830 Male, age 51, unknown 56.9
2219 Male, age 76, both hemispheres 53.5
Dorsal raphe nucleus
nTPM: 64.6
2047 Male, age 72, unknown 68.6
2298 Female, age 72, unknown 66.6
2016 Female, age 72, unknown 65.7
1828 Male, age 53, unknown 63.8
2750 Male, age 76, both hemispheres 58.2
Inferior colliculus
nTPM: 60.2
2097 Female, age 72, unknown 63.9
1890 Male, age 53, unknown 62.0
1848 Female, age 42, unknown 60.9
2849 Male, age 72, unknown 53.9
Median raphe nucleus
nTPM: 61.3
2220 Male, age 76, midline 61.3
Periaquaductal grey, anterior
nTPM: 69.9
1947 Male, age 18, unknown 77.7
2502 Female, age 75, unknown 69.9
1795 Male, age 51, unknown 62.2
Periaquaductal grey, dorsal
nTPM: 63.9
1840 Male, age 53, unknown 74.5
2464 Female, age 72, unknown 64.0
1831 Male, age 72, unknown 61.0
2850 Male, age 76, both hemispheres 56.3
Periaquaductal grey, lateral
nTPM: 57.9
2053 Male, age 18, unknown 66.9
2140 Male, age 76, both hemispheres 56.9
2272 Male, age 74, both hemispheres 49.9
Pretectal area
nTPM: 63.3
1944 Female, age 72, unknown 68.0
1816 Male, age 51, unknown 67.5
2224 Female, age 72, unknown 67.1
2316 Male, age 76, right hemisphere 65.6
2007 Male, age 72, unknown 63.9
2407 Male, age 75, both hemispheres 63.5
1815 Male, age 53, unknown 63.3
2825 Male, age 18, unknown 62.7
1817 Female, age 42, unknown 62.5
2667 Female, age 75, unknown 58.1
2273 Male, age 74, both hemispheres 54.1
Red nucleus
nTPM: 57.7
1821 Female, age 72, unknown 68.0
2725 Female, age 75, unknown 60.6
2584 Male, age 75, left hemisphere 60.2
1954 Female, age 42, unknown 59.9
1904 Male, age 53, unknown 59.6
2503 Female, age 72, unknown 58.0
2588 Male, age 74, left hemisphere 57.5
2769 Male, age 72, unknown 56.3
1865 Male, age 51, unknown 55.5
2823 Male, age 76, right hemisphere 53.5
2785 Male, age 18, unknown 52.1
2227 Male, age 72, unknown 51.6
Substantia nigra
nTPM: 67.6
1916 Female, age 42, unknown 79.5
2241 Male, age 72, unknown 77.0
1851 Male, age 51, unknown 74.6
1889 Female, age 72, unknown 69.8
2665 Male, age 74, both hemispheres 65.2
2590 Female, age 75, unknown 64.8
1941 Male, age 53, unknown 63.1
2583 Male, age 75, right hemisphere 62.2
2699 Male, age 18, unknown 61.0
2409 Female, age 72, unknown 58.4
Superior colliculus
nTPM: 63.5
2664 Male, age 75, both hemispheres 73.3
2668 Female, age 75, unknown 67.7
2587 Male, age 74, left hemisphere 65.3
1839 Male, age 51, unknown 63.2
2087 Female, age 72, unknown 62.9
1913 Female, age 42, unknown 61.8
2261 Male, age 18, unknown 61.1
1895 Male, age 76, right hemisphere 60.7
1995 Male, age 72, unknown 59.7
1796 Male, age 53, unknown 59.5
Ventral tegmental area
nTPM: 64.0
2410 Female, age 72, unknown 71.3
1915 Female, age 42, unknown 70.7
1942 Male, age 51, unknown 68.5
2021 Male, age 53, unknown 62.2
2223 Female, age 72, unknown 56.1
2218 Male, age 76, both hemispheres 55.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.3
Samples: 139

Max nTPM: 55.6
Min nTPM: 22.9
Std nTPM: 5.2
Median nTPM: 32.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 55.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 46.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 46.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 45.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 45.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 44.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 43.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 43.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 43.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 42.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 42.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.7
FF:10158-103A5 76 years, female 97.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.2
Samples: 4

Max nTPM: 52.9
Min nTPM: 31.8
Sample A Female 52.9
Sample B Female 42.1
Sample C Male 38.1
Sample D Male 31.8
Midbrain
nTPM: 40.7
Samples: 4

Max nTPM: 49.3
Min nTPM: 36.9
Sample A Female 49.3
Sample B Female 37.8
Sample C Male 38.6
Sample D Male 36.9
Periaqueductal gray
nTPM: 35.1
Samples: 3

Max nTPM: 38.0
Min nTPM: 32.8
Sample B Female 34.4
Sample C Male 38.0
Sample D Male 32.8
Superior colliculi
nTPM: 40.6
Samples: 4

Max nTPM: 45.4
Min nTPM: 34.5
Sample A Female 45.4
Sample B Female 43.3
Sample C Male 39.2
Sample D Male 34.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 110.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 110.2
Samples: 4

Max nTPM: 112.6
Min nTPM: 108.2
Sample A Male 108.2
Sample B Male 109.9
Sample C Female 112.6
Sample D Female 110.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
321204 Antisense, RP_040617_01_C07, Mouse strain C57BL/6J (56 days, male) 4.1
275695 Antisense, RP_040617_01_C07, Mouse strain C57BL/6J (56 days, male) 4.0

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