MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.4 nTPM
HPA Brain:88.0 nTPM
GTEx:65.4 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:43.8 nTPM
Mouse:61.9 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.9
2586 Male, age 75, left hemisphere 96.7
1827 Male, age 72, unknown 85.1
2828 Female, age 72, unknown 76.0
2666 Male, age 74, left hemisphere 67.8
2411 Female, age 72, unknown 63.9
2219 Male, age 76, both hemispheres 63.5
1870 Female, age 42, unknown 57.9
1833 Male, age 53, unknown 56.0
2019 Male, age 18, unknown 53.4
1830 Male, age 51, unknown 48.1
Dorsal raphe nucleus
nTPM: 60.4
2298 Female, age 72, unknown 73.1
2047 Male, age 72, unknown 65.2
2750 Male, age 76, both hemispheres 57.5
2016 Female, age 72, unknown 55.6
1828 Male, age 53, unknown 50.8
Inferior colliculus
nTPM: 72.4
2097 Female, age 72, unknown 85.2
2849 Male, age 72, unknown 69.7
1848 Female, age 42, unknown 67.7
1890 Male, age 53, unknown 67.1
Median raphe nucleus
nTPM: 72.5
2220 Male, age 76, midline 72.5
Periaquaductal grey, anterior
nTPM: 88.0
1795 Male, age 51, unknown 91.1
2502 Female, age 75, unknown 88.8
1947 Male, age 18, unknown 83.9
Periaquaductal grey, dorsal
nTPM: 65.7
1840 Male, age 53, unknown 86.3
2464 Female, age 72, unknown 68.3
1831 Male, age 72, unknown 56.5
2850 Male, age 76, both hemispheres 51.7
Periaquaductal grey, lateral
nTPM: 58.4
2053 Male, age 18, unknown 69.6
2140 Male, age 76, both hemispheres 55.5
2272 Male, age 74, both hemispheres 50.1
Pretectal area
nTPM: 68.5
1816 Male, age 51, unknown 89.4
1817 Female, age 42, unknown 80.0
1944 Female, age 72, unknown 79.1
2007 Male, age 72, unknown 79.1
2224 Female, age 72, unknown 70.9
2825 Male, age 18, unknown 69.8
1815 Male, age 53, unknown 65.6
2316 Male, age 76, right hemisphere 62.6
2667 Female, age 75, unknown 59.4
2407 Male, age 75, both hemispheres 52.0
2273 Male, age 74, both hemispheres 45.2
Red nucleus
nTPM: 52.9
2588 Male, age 74, left hemisphere 62.2
2503 Female, age 72, unknown 60.6
2584 Male, age 75, left hemisphere 57.9
2769 Male, age 72, unknown 56.6
2227 Male, age 72, unknown 55.1
1954 Female, age 42, unknown 54.4
1821 Female, age 72, unknown 54.1
2785 Male, age 18, unknown 51.9
2725 Female, age 75, unknown 51.7
1904 Male, age 53, unknown 47.5
1865 Male, age 51, unknown 42.0
2823 Male, age 76, right hemisphere 41.3
Substantia nigra
nTPM: 67.7
2665 Male, age 74, both hemispheres 88.8
1916 Female, age 42, unknown 85.7
1889 Female, age 72, unknown 76.1
1851 Male, age 51, unknown 71.1
2590 Female, age 75, unknown 67.4
1941 Male, age 53, unknown 65.4
2241 Male, age 72, unknown 64.7
2699 Male, age 18, unknown 57.3
2409 Female, age 72, unknown 52.1
2583 Male, age 75, right hemisphere 48.8
Superior colliculus
nTPM: 67.6
1796 Male, age 53, unknown 88.8
2664 Male, age 75, both hemispheres 84.0
2261 Male, age 18, unknown 79.6
2087 Female, age 72, unknown 74.6
2668 Female, age 75, unknown 74.0
1839 Male, age 51, unknown 71.1
2587 Male, age 74, left hemisphere 60.1
1895 Male, age 76, right hemisphere 55.0
1913 Female, age 42, unknown 46.7
1995 Male, age 72, unknown 42.4
Ventral tegmental area
nTPM: 62.7
2410 Female, age 72, unknown 70.6
1915 Female, age 42, unknown 69.6
1942 Male, age 51, unknown 66.3
2218 Male, age 76, both hemispheres 64.9
2021 Male, age 53, unknown 58.7
2223 Female, age 72, unknown 46.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.4
Samples: 139

Max nTPM: 129.1
Min nTPM: 16.2
Std nTPM: 20.0
Median nTPM: 66.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 129.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 117.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 110.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 107.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 102.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 97.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 97.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 97.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 95.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 94.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 94.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.7
FF:10158-103A5 76 years, female 43.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.2
Samples: 4

Max nTPM: 46.0
Min nTPM: 25.2
Sample A Female 46.0
Sample B Female 35.2
Sample C Male 42.3
Sample D Male 25.2
Midbrain
nTPM: 43.9
Samples: 4

Max nTPM: 50.1
Min nTPM: 33.5
Sample A Female 42.4
Sample B Female 33.5
Sample C Male 49.4
Sample D Male 50.1
Periaqueductal gray
nTPM: 36.1
Samples: 3

Max nTPM: 41.1
Min nTPM: 30.9
Sample B Female 36.4
Sample C Male 41.1
Sample D Male 30.9
Superior colliculi
nTPM: 39.4
Samples: 4

Max nTPM: 51.5
Min nTPM: 27.7
Sample A Female 51.5
Sample B Female 27.7
Sample C Male 37.8
Sample D Male 40.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.9
Samples: 4

Max nTPM: 64.0
Min nTPM: 59.7
Sample A Male 63.9
Sample B Male 64.0
Sample C Female 59.9
Sample D Female 59.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
100143575 Antisense, RP_110407_01_F08, Mouse strain C57BL/6J (56 days, male) 9.8

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