MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.6 nTPM
HPA Brain:84.3 nTPM
GTEx:40.6 nTPM
FANTOM5:153.6 Scaled Tags Per Million
Pig:114.4 nTPM
Mouse:124.9 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.1
2219 Male, age 76, both hemispheres 83.7
2411 Female, age 72, unknown 82.7
2019 Male, age 18, unknown 80.5
1827 Male, age 72, unknown 69.4
1833 Male, age 53, unknown 66.7
1830 Male, age 51, unknown 63.9
1870 Female, age 42, unknown 63.8
2828 Female, age 72, unknown 60.5
2666 Male, age 74, left hemisphere 56.4
2586 Male, age 75, left hemisphere 53.3
Dorsal raphe nucleus
nTPM: 69.2
1828 Male, age 53, unknown 73.2
2298 Female, age 72, unknown 72.4
2750 Male, age 76, both hemispheres 68.6
2047 Male, age 72, unknown 67.1
2016 Female, age 72, unknown 64.9
Inferior colliculus
nTPM: 62.4
2097 Female, age 72, unknown 77.0
1890 Male, age 53, unknown 65.9
1848 Female, age 42, unknown 58.1
2849 Male, age 72, unknown 48.6
Median raphe nucleus
nTPM: 72.8
2220 Male, age 76, midline 72.8
Periaquaductal grey, anterior
nTPM: 63.5
2502 Female, age 75, unknown 75.2
1795 Male, age 51, unknown 59.1
1947 Male, age 18, unknown 56.4
Periaquaductal grey, dorsal
nTPM: 63.5
2850 Male, age 76, both hemispheres 68.1
2464 Female, age 72, unknown 64.9
1831 Male, age 72, unknown 64.7
1840 Male, age 53, unknown 56.4
Periaquaductal grey, lateral
nTPM: 63.9
2272 Male, age 74, both hemispheres 71.5
2140 Male, age 76, both hemispheres 61.1
2053 Male, age 18, unknown 59.2
Pretectal area
nTPM: 73.9
2007 Male, age 72, unknown 93.3
1815 Male, age 53, unknown 88.2
1944 Female, age 72, unknown 83.7
1817 Female, age 42, unknown 82.8
1816 Male, age 51, unknown 80.3
2273 Male, age 74, both hemispheres 80.0
2224 Female, age 72, unknown 70.3
2667 Female, age 75, unknown 67.6
2316 Male, age 76, right hemisphere 62.2
2825 Male, age 18, unknown 52.7
2407 Male, age 75, both hemispheres 52.0
Red nucleus
nTPM: 67.7
1821 Female, age 72, unknown 85.1
1865 Male, age 51, unknown 74.9
1904 Male, age 53, unknown 74.6
2785 Male, age 18, unknown 74.0
2503 Female, age 72, unknown 73.4
2725 Female, age 75, unknown 72.9
1954 Female, age 42, unknown 70.8
2227 Male, age 72, unknown 62.6
2823 Male, age 76, right hemisphere 61.9
2769 Male, age 72, unknown 61.6
2588 Male, age 74, left hemisphere 51.0
2584 Male, age 75, left hemisphere 49.4
Substantia nigra
nTPM: 84.3
1916 Female, age 42, unknown 141.3
1851 Male, age 51, unknown 98.7
2699 Male, age 18, unknown 95.3
2241 Male, age 72, unknown 84.0
2409 Female, age 72, unknown 81.4
1889 Female, age 72, unknown 79.7
1941 Male, age 53, unknown 70.8
2590 Female, age 75, unknown 67.2
2583 Male, age 75, right hemisphere 64.5
2665 Male, age 74, both hemispheres 60.3
Superior colliculus
nTPM: 63.3
2087 Female, age 72, unknown 70.0
1913 Female, age 42, unknown 69.6
2587 Male, age 74, left hemisphere 69.0
1995 Male, age 72, unknown 68.5
2261 Male, age 18, unknown 67.6
1796 Male, age 53, unknown 64.9
2668 Female, age 75, unknown 63.3
1839 Male, age 51, unknown 57.3
1895 Male, age 76, right hemisphere 57.0
2664 Male, age 75, both hemispheres 45.7
Ventral tegmental area
nTPM: 74.5
2410 Female, age 72, unknown 96.2
1915 Female, age 42, unknown 87.8
2218 Male, age 76, both hemispheres 74.2
2223 Female, age 72, unknown 67.7
2021 Male, age 53, unknown 60.6
1942 Male, age 51, unknown 60.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.6
Samples: 139

Max nTPM: 70.1
Min nTPM: 20.1
Std nTPM: 9.5
Median nTPM: 39.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 70.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 69.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 62.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 61.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 59.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 59.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 58.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 58.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 56.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 56.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 54.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 153.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.6
FF:10158-103A5 76 years, female 153.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 114.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 101.5
Samples: 4

Max nTPM: 124.9
Min nTPM: 86.1
Sample A Female 124.9
Sample B Female 95.8
Sample C Male 99.3
Sample D Male 86.1
Midbrain
nTPM: 114.4
Samples: 4

Max nTPM: 128.7
Min nTPM: 96.5
Sample A Female 128.7
Sample B Female 109.4
Sample C Male 122.9
Sample D Male 96.5
Periaqueductal gray
nTPM: 89.5
Samples: 3

Max nTPM: 93.5
Min nTPM: 82.0
Sample B Female 93.5
Sample C Male 92.9
Sample D Male 82.0
Superior colliculi
nTPM: 110.1
Samples: 4

Max nTPM: 122.6
Min nTPM: 99.5
Sample A Female 118.8
Sample B Female 99.5
Sample C Male 122.6
Sample D Male 99.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 124.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.9
Samples: 4

Max nTPM: 128.9
Min nTPM: 120.3
Sample A Male 120.3
Sample B Male 125.5
Sample C Female 128.9
Sample D Female 125.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
293900 Antisense, RP_040617_01_E10, Mouse strain C57BL/6J (56 days, male) 7.8
324215 Antisense, RP_040617_01_E10, Mouse strain C57BL/6J (56 days, male) 6.4

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