HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:9.9 nTPM
HPA Brain:64.1 nTPM
GTEx:9.9 nTPM
FANTOM5:62.5 Scaled Tags Per Million
Pig:110.7 nTPM
Mouse:52.0 nTPM
Allen mouse:11.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028017Antibody CAB016263
Glial cells Not detectedLow
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.1
Sample id Sample description nTPM
Hippocampus
nTPM: 59.8
2621 Female, age 67, right hemisphere 72.1
1898 Male, age 80, left hemisphere 61.7
1855 Male, age 76, left hemisphere 60.4
2148 Female, age 91, left hemisphere 59.9
2529 Female, age 94, left hemisphere 56.4
1911 Female, age 85, right hemisphere 48.2
Dentate gyrus
nTPM: 60.7
2530 Female, age 94, left hemisphere 73.5
2531 Female, age 67, both hemispheres 64.9
2246 Female, age 85, both hemispheres 60.8
1927 Female, age 91, both hemispheres 58.5
2528 Male, age 74, both hemispheres 53.4
2010 Male, age 76, both hemispheres 53.0
Entorhinal gyrus
nTPM: 64.1
2613 Female, age 94, left hemisphere 73.2
1938 Female, age 85, left hemisphere 66.1
2686 Male, age 75, right hemisphere 64.6
2764 Male, age 80, right hemisphere 64.5
1787 Male, age 76, left hemisphere 58.3
2117 Female, age 91, right hemisphere 57.9
Hippocampus, CA1
nTPM: 61.4
2749 Male, age 80, left hemisphere 83.0
2045 Male, age 76, both hemispheres 63.7
1873 Female, age 85, both hemispheres 61.8
2527 Male, age 74, both hemispheres 51.0
2082 Female, age 91, right hemisphere 47.2
Hippocampus, CA2
nTPM: 59.0
1963 Male, age 80, left hemisphere 73.2
1892 Male, age 76, both hemispheres 69.9
2437 Female, age 94, left hemisphere 57.5
2249 Male, age 74, both hemispheres 54.1
2113 Female, age 91, right hemisphere 51.9
1940 Female, age 85, left hemisphere 47.4
Hippocampus, CA3
nTPM: 56.1
2861 Female, age 67, both hemispheres 69.9
2620 Female, age 94, left hemisphere 61.8
2137 Male, age 80, left hemisphere 59.0
1867 Male, age 76, both hemispheres 54.8
2436 Male, age 74, both hemispheres 48.9
1891 Female, age 85, both hemispheres 42.1
Parahippocampal cortex
nTPM: 63.6
2245 Female, age 91, both hemispheres 81.9
2532 Female, age 72, left hemisphere 81.5
2250 Female, age 67, right hemisphere 69.2
2622 Female, age 67, right hemisphere 66.2
1933 Female, age 85, both hemispheres 61.5
2693 Female, age 94, both hemispheres 60.0
1850 Male, age 80, both hemispheres 57.5
2692 Male, age 74, both hemispheres 57.2
2018 Male, age 76, both hemispheres 51.9
1990 Female, age 91, right hemisphere 49.5
Perirhinal gyrus
nTPM: 63.4
1794 Male, age 80, right hemisphere 67.0
1847 Female, age 91, left hemisphere 66.2
2848 Male, age 76, right hemisphere 63.0
2521 Female, age 94, right hemisphere 61.4
1841 Female, age 85, right hemisphere 59.5
Subiculum
nTPM: 56.2
2438 Female, age 94, left hemisphere 77.9
2619 Male, age 74, both hemispheres 55.8
1977 Female, age 85, both hemispheres 54.5
1901 Male, age 80, both hemispheres 53.3
2042 Male, age 76, both hemispheres 50.1
2729 Female, age 91, right hemisphere 45.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.9
Samples: 197

Max nTPM: 19.4
Min nTPM: 5.6
Std nTPM: 2.8
Median nTPM: 9.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 19.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 18.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 17.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 16.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 16.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 16.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 16.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 16.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 15.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 15.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 15.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.5
FF:10169-103B7 60 years, female 65.4
FF:10153-102I9 76 years, female 59.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 110.7
Pig sample Sample description nTPM
Subiculum
nTPM: 104.1
Samples: 4

Max nTPM: 119.9
Min nTPM: 96.1
Sample A Female 119.9
Sample B Female 96.1
Sample C Male 102.1
Sample D Male 98.1
Dorsal hippocampus
nTPM: 100.9
Samples: 4

Max nTPM: 112.1
Min nTPM: 81.0
Sample A Female 107.1
Sample B Female 103.3
Sample C Male 112.1
Sample D Male 81.0
Entorhinal cortex
nTPM: 110.7
Samples: 4

Max nTPM: 119.8
Min nTPM: 105.1
Sample A Female 110.8
Sample B Female 105.1
Sample C Male 119.8
Sample D Male 107.1
Ventral hippocampus
nTPM: 97.4
Samples: 4

Max nTPM: 105.7
Min nTPM: 82.9
Sample A Female 101.4
Sample B Female 82.9
Sample C Male 105.7
Sample D Male 99.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 52.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 52.0
Samples: 4

Max nTPM: 66.5
Min nTPM: 43.7
Sample A Male 49.8
Sample B Male 47.8
Sample C Female 43.7
Sample D Female 66.5
Hippocampal formation
nTPM: 42.0
Samples: 4

Max nTPM: 49.2
Min nTPM: 35.3
Sample A Male 35.3
Sample B Male 47.8
Sample C Female 49.2
Sample D Female 35.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.8
68269508 Antisense, RP_041129_01_F12, Mouse strain C57BL/6J (56 days, male) 11.8

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