HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:15.1 nTPM
HPA Brain:41.0 nTPM
GTEx:15.1 nTPM
FANTOM5:15.0 Scaled Tags Per Million
Pig:28.0 nTPM
Mouse:35.4 nTPM
Allen mouse:1.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001820Antibody CAB022050
Glial cells Not detectedHigh
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 41.0
Sample id Sample description nTPM
Hippocampus
nTPM: 40.2
2148 Female, age 91, left hemisphere 51.3
2529 Female, age 94, left hemisphere 48.1
1855 Male, age 76, left hemisphere 38.5
1911 Female, age 85, right hemisphere 37.3
1898 Male, age 80, left hemisphere 33.7
2621 Female, age 67, right hemisphere 32.3
Dentate gyrus
nTPM: 38.7
2010 Male, age 76, both hemispheres 48.9
2528 Male, age 74, both hemispheres 41.1
2531 Female, age 67, both hemispheres 37.4
2530 Female, age 94, left hemisphere 36.4
1927 Female, age 91, both hemispheres 34.1
2246 Female, age 85, both hemispheres 34.0
Entorhinal gyrus
nTPM: 25.4
2117 Female, age 91, right hemisphere 34.3
1787 Male, age 76, left hemisphere 26.6
1938 Female, age 85, left hemisphere 25.0
2686 Male, age 75, right hemisphere 24.6
2764 Male, age 80, right hemisphere 21.7
2613 Female, age 94, left hemisphere 20.0
Hippocampus, CA1
nTPM: 37.6
2045 Male, age 76, both hemispheres 46.2
2082 Female, age 91, right hemisphere 41.4
1873 Female, age 85, both hemispheres 40.6
2527 Male, age 74, both hemispheres 37.0
2749 Male, age 80, left hemisphere 23.0
Hippocampus, CA2
nTPM: 37.2
2113 Female, age 91, right hemisphere 43.3
2249 Male, age 74, both hemispheres 41.0
1963 Male, age 80, left hemisphere 39.5
1940 Female, age 85, left hemisphere 37.7
2437 Female, age 94, left hemisphere 34.4
1892 Male, age 76, both hemispheres 27.5
Hippocampus, CA3
nTPM: 41.0
2436 Male, age 74, both hemispheres 60.9
2861 Female, age 67, both hemispheres 45.9
2620 Female, age 94, left hemisphere 39.4
1867 Male, age 76, both hemispheres 36.7
1891 Female, age 85, both hemispheres 33.9
2137 Male, age 80, left hemisphere 28.9
Parahippocampal cortex
nTPM: 26.3
2018 Male, age 76, both hemispheres 38.4
2692 Male, age 74, both hemispheres 30.6
2245 Female, age 91, both hemispheres 28.0
2250 Female, age 67, right hemisphere 26.7
2622 Female, age 67, right hemisphere 25.4
1990 Female, age 91, right hemisphere 25.3
1933 Female, age 85, both hemispheres 23.7
2532 Female, age 72, left hemisphere 23.0
2693 Female, age 94, both hemispheres 21.8
1850 Male, age 80, both hemispheres 20.0
Perirhinal gyrus
nTPM: 22.4
1841 Female, age 85, right hemisphere 23.8
1847 Female, age 91, left hemisphere 23.6
1794 Male, age 80, right hemisphere 23.5
2521 Female, age 94, right hemisphere 22.4
2848 Male, age 76, right hemisphere 18.6
Subiculum
nTPM: 32.2
2729 Female, age 91, right hemisphere 48.2
2042 Male, age 76, both hemispheres 37.3
2619 Male, age 74, both hemispheres 35.2
1901 Male, age 80, both hemispheres 26.6
2438 Female, age 94, left hemisphere 24.8
1977 Female, age 85, both hemispheres 21.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.1
Samples: 197

Max nTPM: 30.1
Min nTPM: 5.5
Std nTPM: 4.7
Median nTPM: 14.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 30.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 29.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 28.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 28.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 27.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 26.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 24.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 24.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 24.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 24.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 23.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.0
FF:10153-102I9 76 years, female 22.9
FF:10169-103B7 60 years, female 7.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.0
Pig sample Sample description nTPM
Subiculum
nTPM: 23.1
Samples: 4

Max nTPM: 27.8
Min nTPM: 20.5
Sample A Female 27.8
Sample B Female 23.0
Sample C Male 21.1
Sample D Male 20.5
Dorsal hippocampus
nTPM: 26.9
Samples: 4

Max nTPM: 35.6
Min nTPM: 17.2
Sample A Female 35.6
Sample B Female 25.0
Sample C Male 29.7
Sample D Male 17.2
Entorhinal cortex
nTPM: 18.7
Samples: 4

Max nTPM: 21.2
Min nTPM: 14.5
Sample A Female 17.9
Sample B Female 21.0
Sample C Male 21.2
Sample D Male 14.5
Ventral hippocampus
nTPM: 28.0
Samples: 4

Max nTPM: 37.5
Min nTPM: 19.7
Sample A Female 22.0
Sample B Female 19.7
Sample C Male 32.9
Sample D Male 37.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 35.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.4
Samples: 4

Max nTPM: 39.6
Min nTPM: 30.4
Sample A Male 34.1
Sample B Male 30.4
Sample C Female 37.5
Sample D Female 39.6
Hippocampal formation
nTPM: 35.0
Samples: 4

Max nTPM: 39.9
Min nTPM: 31.0
Sample A Male 31.0
Sample B Male 31.7
Sample C Female 37.5
Sample D Female 39.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.4
71920512 Antisense, RP_051017_02_G05, Mouse strain C57BL/6J (56 days, male) 1.5
68798193 Antisense, RP_050215_02_A02, Mouse strain C57BL/6J (56 days, male) 1.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org