MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.1 nTPM
HPA Brain:48.5 nTPM
GTEx:20.1 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:56.1 nTPM
Mouse:35.6 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.3
2586 Male, age 75, left hemisphere 63.3
1870 Female, age 42, unknown 47.0
1830 Male, age 51, unknown 46.5
2019 Male, age 18, unknown 45.6
2411 Female, age 72, unknown 45.2
2828 Female, age 72, unknown 44.6
1833 Male, age 53, unknown 43.9
1827 Male, age 72, unknown 35.8
2219 Male, age 76, both hemispheres 35.4
2666 Male, age 74, left hemisphere 35.4
Dorsal raphe nucleus
nTPM: 36.6
2750 Male, age 76, both hemispheres 48.9
2016 Female, age 72, unknown 39.9
1828 Male, age 53, unknown 34.0
2047 Male, age 72, unknown 32.5
2298 Female, age 72, unknown 27.4
Inferior colliculus
nTPM: 35.4
1890 Male, age 53, unknown 37.9
2097 Female, age 72, unknown 34.9
2849 Male, age 72, unknown 34.8
1848 Female, age 42, unknown 34.0
Median raphe nucleus
nTPM: 33.0
2220 Male, age 76, midline 33.0
Periaquaductal grey, anterior
nTPM: 37.5
2502 Female, age 75, unknown 43.9
1795 Male, age 51, unknown 35.6
1947 Male, age 18, unknown 33.0
Periaquaductal grey, dorsal
nTPM: 33.4
2464 Female, age 72, unknown 35.4
1831 Male, age 72, unknown 34.8
1840 Male, age 53, unknown 34.1
2850 Male, age 76, both hemispheres 29.4
Periaquaductal grey, lateral
nTPM: 36.3
2053 Male, age 18, unknown 39.2
2272 Male, age 74, both hemispheres 36.8
2140 Male, age 76, both hemispheres 32.8
Pretectal area
nTPM: 35.7
2407 Male, age 75, both hemispheres 46.7
1815 Male, age 53, unknown 39.9
2825 Male, age 18, unknown 38.7
2273 Male, age 74, both hemispheres 36.8
1817 Female, age 42, unknown 36.2
2007 Male, age 72, unknown 35.7
2667 Female, age 75, unknown 34.2
2224 Female, age 72, unknown 32.3
2316 Male, age 76, right hemisphere 31.9
1816 Male, age 51, unknown 31.6
1944 Female, age 72, unknown 28.8
Red nucleus
nTPM: 48.5
1865 Male, age 51, unknown 56.9
1904 Male, age 53, unknown 56.3
2769 Male, age 72, unknown 53.1
2227 Male, age 72, unknown 51.9
2588 Male, age 74, left hemisphere 50.1
2503 Female, age 72, unknown 47.9
2584 Male, age 75, left hemisphere 47.6
2785 Male, age 18, unknown 47.5
1821 Female, age 72, unknown 47.1
1954 Female, age 42, unknown 45.6
2823 Male, age 76, right hemisphere 44.3
2725 Female, age 75, unknown 33.9
Substantia nigra
nTPM: 38.3
2583 Male, age 75, right hemisphere 46.6
2590 Female, age 75, unknown 42.4
2665 Male, age 74, both hemispheres 40.6
1851 Male, age 51, unknown 39.5
2699 Male, age 18, unknown 37.5
2409 Female, age 72, unknown 37.4
1916 Female, age 42, unknown 36.3
1889 Female, age 72, unknown 35.5
2241 Male, age 72, unknown 35.4
1941 Male, age 53, unknown 31.4
Superior colliculus
nTPM: 43.0
2664 Male, age 75, both hemispheres 56.6
1913 Female, age 42, unknown 49.8
1995 Male, age 72, unknown 49.7
2668 Female, age 75, unknown 47.4
2587 Male, age 74, left hemisphere 44.3
2261 Male, age 18, unknown 39.9
1839 Male, age 51, unknown 39.4
1796 Male, age 53, unknown 37.1
1895 Male, age 76, right hemisphere 34.5
2087 Female, age 72, unknown 31.9
Ventral tegmental area
nTPM: 40.4
2223 Female, age 72, unknown 56.3
2410 Female, age 72, unknown 41.0
2021 Male, age 53, unknown 40.1
1942 Male, age 51, unknown 38.4
1915 Female, age 42, unknown 34.3
2218 Male, age 76, both hemispheres 32.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.1
Samples: 139

Max nTPM: 36.5
Min nTPM: 10.0
Std nTPM: 5.4
Median nTPM: 19.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 36.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 33.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 32.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 30.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 30.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 29.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 29.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 29.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 28.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 28.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.8
FF:10158-103A5 76 years, female 35.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.1
Samples: 4

Max nTPM: 53.3
Min nTPM: 34.6
Sample A Female 39.0
Sample B Female 34.6
Sample C Male 41.4
Sample D Male 53.3
Midbrain
nTPM: 56.1
Samples: 4

Max nTPM: 88.3
Min nTPM: 35.8
Sample A Female 51.5
Sample B Female 35.8
Sample C Male 88.3
Sample D Male 48.6
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 33.5
Min nTPM: 30.2
Sample B Female 33.5
Sample C Male 30.5
Sample D Male 30.2
Superior colliculi
nTPM: 48.5
Samples: 4

Max nTPM: 63.8
Min nTPM: 37.2
Sample A Female 37.5
Sample B Female 37.2
Sample C Male 63.8
Sample D Male 55.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.7
Samples: 4

Max nTPM: 38.3
Min nTPM: 33.5
Sample A Male 33.5
Sample B Male 35.7
Sample C Female 38.3
Sample D Female 35.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
70194570 Antisense, RP_050517_01_F06, Mouse strain C57BL/6J (56 days, male) 1.6

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