HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:47.3 nTPM
GTEx:9.6 nTPM
FANTOM5:51.5 Scaled Tags Per Million
Pig:54.4 nTPM
Mouse:32.4 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039513Antibody HPA040015
Glial cells HighLow
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 47.3
Sample id Sample description nTPM
Hippocampus
nTPM: 37.5
2621 Female, age 67, right hemisphere 44.2
1855 Male, age 76, left hemisphere 41.7
1911 Female, age 85, right hemisphere 38.8
1898 Male, age 80, left hemisphere 37.3
2529 Female, age 94, left hemisphere 34.3
2148 Female, age 91, left hemisphere 28.4
Dentate gyrus
nTPM: 33.2
1927 Female, age 91, both hemispheres 41.8
2246 Female, age 85, both hemispheres 38.5
2010 Male, age 76, both hemispheres 33.4
2531 Female, age 67, both hemispheres 32.5
2530 Female, age 94, left hemisphere 31.3
2528 Male, age 74, both hemispheres 21.9
Entorhinal gyrus
nTPM: 42.1
1938 Female, age 85, left hemisphere 60.2
2686 Male, age 75, right hemisphere 46.4
2613 Female, age 94, left hemisphere 44.5
1787 Male, age 76, left hemisphere 40.0
2764 Male, age 80, right hemisphere 34.2
2117 Female, age 91, right hemisphere 27.0
Hippocampus, CA1
nTPM: 40.0
2749 Male, age 80, left hemisphere 64.1
1873 Female, age 85, both hemispheres 39.4
2527 Male, age 74, both hemispheres 37.8
2045 Male, age 76, both hemispheres 32.6
2082 Female, age 91, right hemisphere 26.3
Hippocampus, CA2
nTPM: 34.2
1892 Male, age 76, both hemispheres 48.1
2437 Female, age 94, left hemisphere 33.1
1963 Male, age 80, left hemisphere 32.6
1940 Female, age 85, left hemisphere 31.1
2249 Male, age 74, both hemispheres 30.3
2113 Female, age 91, right hemisphere 29.9
Hippocampus, CA3
nTPM: 39.2
2137 Male, age 80, left hemisphere 58.2
1867 Male, age 76, both hemispheres 40.8
2861 Female, age 67, both hemispheres 35.1
1891 Female, age 85, both hemispheres 34.7
2436 Male, age 74, both hemispheres 33.7
2620 Female, age 94, left hemisphere 32.6
Parahippocampal cortex
nTPM: 42.1
2532 Female, age 72, left hemisphere 54.7
2245 Female, age 91, both hemispheres 51.7
1850 Male, age 80, both hemispheres 48.2
2622 Female, age 67, right hemisphere 45.6
1933 Female, age 85, both hemispheres 41.1
2250 Female, age 67, right hemisphere 40.9
2693 Female, age 94, both hemispheres 39.1
1990 Female, age 91, right hemisphere 38.8
2692 Male, age 74, both hemispheres 35.0
2018 Male, age 76, both hemispheres 25.6
Perirhinal gyrus
nTPM: 47.3
1794 Male, age 80, right hemisphere 49.9
2848 Male, age 76, right hemisphere 49.4
1841 Female, age 85, right hemisphere 49.1
1847 Female, age 91, left hemisphere 46.6
2521 Female, age 94, right hemisphere 41.5
Subiculum
nTPM: 36.6
2438 Female, age 94, left hemisphere 49.8
1901 Male, age 80, both hemispheres 45.4
1977 Female, age 85, both hemispheres 43.1
2042 Male, age 76, both hemispheres 30.9
2619 Male, age 74, both hemispheres 28.9
2729 Female, age 91, right hemisphere 21.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.6
Samples: 197

Max nTPM: 19.7
Min nTPM: 4.8
Std nTPM: 2.9
Median nTPM: 9.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 19.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 18.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 17.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 17.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 17.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 16.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 16.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 16.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 16.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 16.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 15.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.5
FF:10169-103B7 60 years, female 55.0
FF:10153-102I9 76 years, female 48.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 54.4
Pig sample Sample description nTPM
Subiculum
nTPM: 52.0
Samples: 4

Max nTPM: 70.9
Min nTPM: 44.6
Sample A Female 70.9
Sample B Female 44.6
Sample C Male 45.3
Sample D Male 47.0
Dorsal hippocampus
nTPM: 54.5
Samples: 4

Max nTPM: 59.2
Min nTPM: 46.3
Sample A Female 59.0
Sample B Female 59.2
Sample C Male 53.3
Sample D Male 46.3
Entorhinal cortex
nTPM: 50.4
Samples: 4

Max nTPM: 55.1
Min nTPM: 47.4
Sample A Female 48.7
Sample B Female 55.1
Sample C Male 47.4
Sample D Male 50.5
Ventral hippocampus
nTPM: 47.9
Samples: 4

Max nTPM: 61.3
Min nTPM: 36.8
Sample A Female 47.8
Sample B Female 45.6
Sample C Male 36.8
Sample D Male 61.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 32.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.4
Samples: 4

Max nTPM: 31.0
Min nTPM: 29.6
Sample A Male 30.3
Sample B Male 29.6
Sample C Female 30.5
Sample D Female 31.0
Hippocampal formation
nTPM: 32.4
Samples: 4

Max nTPM: 34.1
Min nTPM: 29.8
Sample A Male 32.1
Sample B Male 34.1
Sample C Female 33.7
Sample D Female 29.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
71283592 Antisense, RP_050825_01_C01, Mouse strain C57BL/6J (56 days, male) 0.9
71160988 Antisense, RP_050810_02_D04, Mouse strain C57BL/6J (56 days, male) 0.5

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