MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:632.6 nTPM
HPA Brain:284.8 nTPM
GTEx:632.6 nTPM
FANTOM5:284.5 Scaled Tags Per Million
Pig:240.5 nTPM
Mouse:427.4 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 284.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 261.5
2586 Male, age 75, left hemisphere 390.7
2666 Male, age 74, left hemisphere 287.8
2411 Female, age 72, unknown 287.6
1870 Female, age 42, unknown 260.3
1827 Male, age 72, unknown 250.8
2828 Female, age 72, unknown 248.2
1833 Male, age 53, unknown 235.1
1830 Male, age 51, unknown 225.3
2019 Male, age 18, unknown 220.2
2219 Male, age 76, both hemispheres 209.1
Dorsal raphe nucleus
nTPM: 266.1
2298 Female, age 72, unknown 280.0
2016 Female, age 72, unknown 272.7
2750 Male, age 76, both hemispheres 263.7
2047 Male, age 72, unknown 262.4
1828 Male, age 53, unknown 251.7
Inferior colliculus
nTPM: 227.1
1890 Male, age 53, unknown 243.4
2097 Female, age 72, unknown 235.8
1848 Female, age 42, unknown 222.1
2849 Male, age 72, unknown 207.1
Median raphe nucleus
nTPM: 219.9
2220 Male, age 76, midline 219.9
Periaquaductal grey, anterior
nTPM: 284.8
2502 Female, age 75, unknown 337.2
1947 Male, age 18, unknown 262.7
1795 Male, age 51, unknown 254.5
Periaquaductal grey, dorsal
nTPM: 227.5
1840 Male, age 53, unknown 251.4
2464 Female, age 72, unknown 239.4
1831 Male, age 72, unknown 238.0
2850 Male, age 76, both hemispheres 181.1
Periaquaductal grey, lateral
nTPM: 209.9
2053 Male, age 18, unknown 260.6
2140 Male, age 76, both hemispheres 189.0
2272 Male, age 74, both hemispheres 180.2
Pretectal area
nTPM: 220.2
2825 Male, age 18, unknown 239.9
2007 Male, age 72, unknown 239.1
2407 Male, age 75, both hemispheres 237.2
2316 Male, age 76, right hemisphere 236.3
2224 Female, age 72, unknown 227.6
1815 Male, age 53, unknown 227.4
1817 Female, age 42, unknown 224.7
1816 Male, age 51, unknown 220.7
2273 Male, age 74, both hemispheres 193.1
1944 Female, age 72, unknown 189.4
2667 Female, age 75, unknown 186.7
Red nucleus
nTPM: 270.6
2503 Female, age 72, unknown 325.8
2584 Male, age 75, left hemisphere 309.6
1821 Female, age 72, unknown 293.0
1904 Male, age 53, unknown 285.5
2588 Male, age 74, left hemisphere 284.2
2769 Male, age 72, unknown 284.0
1865 Male, age 51, unknown 278.7
2227 Male, age 72, unknown 276.9
2785 Male, age 18, unknown 245.9
2725 Female, age 75, unknown 243.2
1954 Female, age 42, unknown 223.4
2823 Male, age 76, right hemisphere 197.5
Substantia nigra
nTPM: 272.5
1851 Male, age 51, unknown 337.8
2665 Male, age 74, both hemispheres 302.8
2699 Male, age 18, unknown 295.5
2590 Female, age 75, unknown 290.3
1916 Female, age 42, unknown 283.1
2583 Male, age 75, right hemisphere 263.5
1889 Female, age 72, unknown 248.0
1941 Male, age 53, unknown 237.8
2241 Male, age 72, unknown 235.5
2409 Female, age 72, unknown 230.4
Superior colliculus
nTPM: 257.7
2664 Male, age 75, both hemispheres 325.3
2587 Male, age 74, left hemisphere 298.3
1995 Male, age 72, unknown 266.1
2668 Female, age 75, unknown 258.3
1796 Male, age 53, unknown 257.2
1839 Male, age 51, unknown 256.9
1913 Female, age 42, unknown 254.0
2261 Male, age 18, unknown 233.2
1895 Male, age 76, right hemisphere 215.9
2087 Female, age 72, unknown 211.4
Ventral tegmental area
nTPM: 265.5
2410 Female, age 72, unknown 301.5
1915 Female, age 42, unknown 293.4
2223 Female, age 72, unknown 269.5
2021 Male, age 53, unknown 261.4
1942 Male, age 51, unknown 254.9
2218 Male, age 76, both hemispheres 212.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 632.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 632.6
Samples: 139

Max nTPM: 1853.0
Min nTPM: 289.3
Std nTPM: 232.8
Median nTPM: 581.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1853.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1390.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1289.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1286.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1197.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1143.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1099.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1076.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1056.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1043.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 937.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 284.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 284.5
FF:10158-103A5 76 years, female 284.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 240.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 235.2
Samples: 4

Max nTPM: 291.0
Min nTPM: 180.7
Sample A Female 291.0
Sample B Female 243.5
Sample C Male 180.7
Sample D Male 225.7
Midbrain
nTPM: 231.6
Samples: 4

Max nTPM: 349.5
Min nTPM: 161.1
Sample A Female 349.5
Sample B Female 234.1
Sample C Male 181.8
Sample D Male 161.1
Periaqueductal gray
nTPM: 175.7
Samples: 3

Max nTPM: 182.9
Min nTPM: 166.4
Sample B Female 182.9
Sample C Male 177.7
Sample D Male 166.4
Superior colliculi
nTPM: 240.5
Samples: 4

Max nTPM: 283.7
Min nTPM: 189.6
Sample A Female 283.7
Sample B Female 274.1
Sample C Male 189.6
Sample D Male 214.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 427.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 427.5
Samples: 4

Max nTPM: 486.7
Min nTPM: 382.9
Sample A Male 486.7
Sample B Male 414.3
Sample C Female 382.9
Sample D Female 425.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
77464982 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 7.5
77868800 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 2.3

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