MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.3 nTPM
HPA Brain:69.1 nTPM
GTEx:36.3 nTPM
FANTOM5:91.9 Scaled Tags Per Million
Pig:110.0 nTPM
Mouse:83.4 nTPM
Allen mouse:12.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.5
2666 Male, age 74, left hemisphere 57.9
1833 Male, age 53, unknown 57.6
1827 Male, age 72, unknown 56.5
2019 Male, age 18, unknown 54.7
1830 Male, age 51, unknown 52.1
1870 Female, age 42, unknown 52.1
2411 Female, age 72, unknown 48.4
2828 Female, age 72, unknown 48.0
2219 Male, age 76, both hemispheres 46.5
2586 Male, age 75, left hemisphere 41.0
Dorsal raphe nucleus
nTPM: 52.3
2298 Female, age 72, unknown 57.2
1828 Male, age 53, unknown 55.2
2047 Male, age 72, unknown 53.1
2750 Male, age 76, both hemispheres 49.6
2016 Female, age 72, unknown 46.3
Inferior colliculus
nTPM: 58.3
2849 Male, age 72, unknown 62.0
2097 Female, age 72, unknown 59.6
1848 Female, age 42, unknown 56.5
1890 Male, age 53, unknown 55.2
Median raphe nucleus
nTPM: 58.2
2220 Male, age 76, midline 58.2
Periaquaductal grey, anterior
nTPM: 49.9
1947 Male, age 18, unknown 57.5
1795 Male, age 51, unknown 50.9
2502 Female, age 75, unknown 41.2
Periaquaductal grey, dorsal
nTPM: 53.7
2850 Male, age 76, both hemispheres 63.2
1840 Male, age 53, unknown 54.3
1831 Male, age 72, unknown 51.3
2464 Female, age 72, unknown 46.1
Periaquaductal grey, lateral
nTPM: 55.3
2272 Male, age 74, both hemispheres 59.7
2140 Male, age 76, both hemispheres 58.5
2053 Male, age 18, unknown 47.7
Pretectal area
nTPM: 53.0
2007 Male, age 72, unknown 58.8
2273 Male, age 74, both hemispheres 57.3
1817 Female, age 42, unknown 55.4
2316 Male, age 76, right hemisphere 55.4
2407 Male, age 75, both hemispheres 55.1
2825 Male, age 18, unknown 54.5
1816 Male, age 51, unknown 50.4
2224 Female, age 72, unknown 49.4
1944 Female, age 72, unknown 49.0
1815 Male, age 53, unknown 48.7
2667 Female, age 75, unknown 48.7
Red nucleus
nTPM: 48.3
2584 Male, age 75, left hemisphere 58.4
2785 Male, age 18, unknown 51.8
1821 Female, age 72, unknown 50.3
2725 Female, age 75, unknown 49.5
2227 Male, age 72, unknown 49.2
2769 Male, age 72, unknown 48.6
2503 Female, age 72, unknown 47.5
1904 Male, age 53, unknown 45.6
1865 Male, age 51, unknown 45.2
1954 Female, age 42, unknown 45.0
2588 Male, age 74, left hemisphere 44.9
2823 Male, age 76, right hemisphere 44.1
Substantia nigra
nTPM: 69.1
2665 Male, age 74, both hemispheres 105.0
2590 Female, age 75, unknown 77.0
1916 Female, age 42, unknown 75.2
1941 Male, age 53, unknown 71.8
2241 Male, age 72, unknown 68.1
1851 Male, age 51, unknown 64.2
2699 Male, age 18, unknown 61.4
2583 Male, age 75, right hemisphere 59.6
2409 Female, age 72, unknown 54.6
1889 Female, age 72, unknown 54.0
Superior colliculus
nTPM: 50.1
2587 Male, age 74, left hemisphere 68.0
1839 Male, age 51, unknown 59.8
2668 Female, age 75, unknown 54.9
1796 Male, age 53, unknown 53.0
2664 Male, age 75, both hemispheres 52.2
1895 Male, age 76, right hemisphere 46.0
2261 Male, age 18, unknown 45.7
2087 Female, age 72, unknown 44.4
1913 Female, age 42, unknown 39.8
1995 Male, age 72, unknown 37.3
Ventral tegmental area
nTPM: 58.4
2218 Male, age 76, both hemispheres 63.7
1915 Female, age 42, unknown 62.5
2410 Female, age 72, unknown 59.5
2223 Female, age 72, unknown 59.1
1942 Male, age 51, unknown 54.1
2021 Male, age 53, unknown 51.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.3
Samples: 139

Max nTPM: 75.8
Min nTPM: 16.6
Std nTPM: 11.6
Median nTPM: 35.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 75.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 66.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 65.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 63.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 61.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 59.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 58.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 57.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 56.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 55.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 54.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.9
FF:10158-103A5 76 years, female 91.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 110.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 103.7
Samples: 4

Max nTPM: 125.2
Min nTPM: 84.0
Sample A Female 125.2
Sample B Female 84.0
Sample C Male 116.6
Sample D Male 89.0
Midbrain
nTPM: 110.1
Samples: 4

Max nTPM: 118.6
Min nTPM: 94.6
Sample A Female 112.7
Sample B Female 94.6
Sample C Male 118.6
Sample D Male 114.3
Periaqueductal gray
nTPM: 96.8
Samples: 3

Max nTPM: 114.2
Min nTPM: 82.5
Sample B Female 93.8
Sample C Male 114.2
Sample D Male 82.5
Superior colliculi
nTPM: 105.3
Samples: 4

Max nTPM: 131.9
Min nTPM: 56.2
Sample A Female 131.9
Sample B Female 56.2
Sample C Male 122.2
Sample D Male 110.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 83.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.4
Samples: 4

Max nTPM: 88.9
Min nTPM: 78.5
Sample A Male 78.5
Sample B Male 83.0
Sample C Female 88.9
Sample D Female 83.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
69407122 Antisense, RP_050412_02_H10, Mouse strain C57BL/6J (56 days, male) 12.1

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