MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.3 nTPM
HPA Brain:37.0 nTPM
GTEx:8.3 nTPM
FANTOM5:16.2 Scaled Tags Per Million
Pig:38.9 nTPM
Mouse:104.0 nTPM
Allen mouse:11.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.3
2666 Male, age 74, left hemisphere 42.6
2586 Male, age 75, left hemisphere 37.3
1827 Male, age 72, unknown 34.5
2411 Female, age 72, unknown 30.6
2019 Male, age 18, unknown 29.4
2828 Female, age 72, unknown 29.0
1833 Male, age 53, unknown 28.7
2219 Male, age 76, both hemispheres 28.4
1870 Female, age 42, unknown 26.6
1830 Male, age 51, unknown 25.6
Dorsal raphe nucleus
nTPM: 31.3
2298 Female, age 72, unknown 37.1
2047 Male, age 72, unknown 33.8
1828 Male, age 53, unknown 30.9
2750 Male, age 76, both hemispheres 30.6
2016 Female, age 72, unknown 24.0
Inferior colliculus
nTPM: 37.0
2097 Female, age 72, unknown 45.0
1890 Male, age 53, unknown 38.7
1848 Female, age 42, unknown 35.3
2849 Male, age 72, unknown 28.9
Median raphe nucleus
nTPM: 36.0
2220 Male, age 76, midline 36.0
Periaquaductal grey, anterior
nTPM: 36.5
1947 Male, age 18, unknown 43.9
2502 Female, age 75, unknown 36.6
1795 Male, age 51, unknown 29.1
Periaquaductal grey, dorsal
nTPM: 29.5
1840 Male, age 53, unknown 34.3
2464 Female, age 72, unknown 32.1
1831 Male, age 72, unknown 26.7
2850 Male, age 76, both hemispheres 25.0
Periaquaductal grey, lateral
nTPM: 23.5
2053 Male, age 18, unknown 25.4
2140 Male, age 76, both hemispheres 25.0
2272 Male, age 74, both hemispheres 20.0
Pretectal area
nTPM: 33.7
1816 Male, age 51, unknown 48.2
1817 Female, age 42, unknown 43.3
1944 Female, age 72, unknown 40.5
2007 Male, age 72, unknown 38.5
1815 Male, age 53, unknown 36.5
2667 Female, age 75, unknown 32.9
2224 Female, age 72, unknown 31.4
2825 Male, age 18, unknown 30.6
2316 Male, age 76, right hemisphere 25.0
2407 Male, age 75, both hemispheres 23.8
2273 Male, age 74, both hemispheres 20.0
Red nucleus
nTPM: 29.6
1821 Female, age 72, unknown 37.0
2588 Male, age 74, left hemisphere 33.9
1954 Female, age 42, unknown 33.1
2725 Female, age 75, unknown 32.6
2503 Female, age 72, unknown 30.9
2823 Male, age 76, right hemisphere 28.8
1904 Male, age 53, unknown 28.0
2227 Male, age 72, unknown 27.7
1865 Male, age 51, unknown 26.4
2769 Male, age 72, unknown 26.2
2584 Male, age 75, left hemisphere 25.6
2785 Male, age 18, unknown 24.5
Substantia nigra
nTPM: 35.2
2241 Male, age 72, unknown 50.0
1916 Female, age 42, unknown 45.4
1889 Female, age 72, unknown 39.4
1851 Male, age 51, unknown 36.5
1941 Male, age 53, unknown 35.0
2665 Male, age 74, both hemispheres 34.1
2409 Female, age 72, unknown 30.0
2590 Female, age 75, unknown 28.9
2583 Male, age 75, right hemisphere 26.6
2699 Male, age 18, unknown 26.1
Superior colliculus
nTPM: 30.3
2087 Female, age 72, unknown 41.1
2261 Male, age 18, unknown 39.6
1895 Male, age 76, right hemisphere 33.3
2668 Female, age 75, unknown 31.2
2664 Male, age 75, both hemispheres 29.3
1796 Male, age 53, unknown 29.1
1839 Male, age 51, unknown 28.8
2587 Male, age 74, left hemisphere 23.7
1913 Female, age 42, unknown 23.4
1995 Male, age 72, unknown 23.3
Ventral tegmental area
nTPM: 31.5
2410 Female, age 72, unknown 36.9
1915 Female, age 42, unknown 35.2
1942 Male, age 51, unknown 34.1
2218 Male, age 76, both hemispheres 32.0
2223 Female, age 72, unknown 25.6
2021 Male, age 53, unknown 25.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.3
Samples: 139

Max nTPM: 23.0
Min nTPM: 2.7
Std nTPM: 4.3
Median nTPM: 7.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 20.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 20.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 18.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 18.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 16.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 16.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 15.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 15.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.2
FF:10158-103A5 76 years, female 16.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.6
Samples: 4

Max nTPM: 31.0
Min nTPM: 15.1
Sample A Female 30.2
Sample B Female 17.9
Sample C Male 31.0
Sample D Male 15.1
Midbrain
nTPM: 32.6
Samples: 4

Max nTPM: 57.9
Min nTPM: 13.7
Sample A Female 13.7
Sample B Female 18.8
Sample C Male 57.9
Sample D Male 40.0
Periaqueductal gray
nTPM: 21.9
Samples: 3

Max nTPM: 26.9
Min nTPM: 18.9
Sample B Female 19.9
Sample C Male 26.9
Sample D Male 18.9
Superior colliculi
nTPM: 38.9
Samples: 4

Max nTPM: 53.8
Min nTPM: 24.9
Sample A Female 35.7
Sample B Female 24.9
Sample C Male 53.8
Sample D Male 41.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.1
Samples: 4

Max nTPM: 114.6
Min nTPM: 95.8
Sample A Male 95.8
Sample B Male 101.8
Sample C Female 114.6
Sample D Female 104.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.6
69446286 Antisense, RP_050419_01_C10, Mouse strain C57BL/6J (56 days, male) 11.6

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