MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.5 nTPM
HPA Brain:63.8 nTPM
GTEx:81.5 nTPM
FANTOM5:175.5 Scaled Tags Per Million
Pig:52.6 nTPM
Mouse:10.0 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.5
2828 Female, age 72, unknown 66.6
1870 Female, age 42, unknown 61.2
2411 Female, age 72, unknown 57.8
2586 Male, age 75, left hemisphere 56.3
1833 Male, age 53, unknown 50.3
2666 Male, age 74, left hemisphere 50.3
1830 Male, age 51, unknown 48.9
1827 Male, age 72, unknown 48.2
2019 Male, age 18, unknown 47.7
2219 Male, age 76, both hemispheres 47.2
Dorsal raphe nucleus
nTPM: 63.8
2298 Female, age 72, unknown 66.7
1828 Male, age 53, unknown 64.7
2750 Male, age 76, both hemispheres 64.2
2047 Male, age 72, unknown 64.1
2016 Female, age 72, unknown 59.2
Inferior colliculus
nTPM: 54.0
1848 Female, age 42, unknown 59.5
2097 Female, age 72, unknown 55.7
1890 Male, age 53, unknown 52.5
2849 Male, age 72, unknown 48.4
Median raphe nucleus
nTPM: 53.3
2220 Male, age 76, midline 53.3
Periaquaductal grey, anterior
nTPM: 48.7
1795 Male, age 51, unknown 51.0
1947 Male, age 18, unknown 49.7
2502 Female, age 75, unknown 45.3
Periaquaductal grey, dorsal
nTPM: 53.5
1840 Male, age 53, unknown 57.6
2464 Female, age 72, unknown 57.1
2850 Male, age 76, both hemispheres 52.0
1831 Male, age 72, unknown 47.3
Periaquaductal grey, lateral
nTPM: 50.4
2053 Male, age 18, unknown 60.7
2140 Male, age 76, both hemispheres 46.9
2272 Male, age 74, both hemispheres 43.7
Pretectal area
nTPM: 51.7
1817 Female, age 42, unknown 61.9
2667 Female, age 75, unknown 58.3
2224 Female, age 72, unknown 55.3
1815 Male, age 53, unknown 52.5
2825 Male, age 18, unknown 52.4
2273 Male, age 74, both hemispheres 51.3
1816 Male, age 51, unknown 50.8
1944 Female, age 72, unknown 49.6
2007 Male, age 72, unknown 47.6
2407 Male, age 75, both hemispheres 45.5
2316 Male, age 76, right hemisphere 43.8
Red nucleus
nTPM: 58.1
1821 Female, age 72, unknown 68.3
2503 Female, age 72, unknown 66.3
1865 Male, age 51, unknown 65.1
1954 Female, age 42, unknown 63.6
2769 Male, age 72, unknown 62.0
1904 Male, age 53, unknown 61.6
2823 Male, age 76, right hemisphere 58.5
2227 Male, age 72, unknown 57.4
2725 Female, age 75, unknown 54.5
2588 Male, age 74, left hemisphere 52.2
2785 Male, age 18, unknown 45.3
2584 Male, age 75, left hemisphere 42.0
Substantia nigra
nTPM: 58.6
2241 Male, age 72, unknown 73.5
2699 Male, age 18, unknown 66.6
2409 Female, age 72, unknown 62.6
1916 Female, age 42, unknown 61.6
1851 Male, age 51, unknown 59.4
1889 Female, age 72, unknown 56.5
1941 Male, age 53, unknown 55.2
2665 Male, age 74, both hemispheres 54.9
2590 Female, age 75, unknown 51.8
2583 Male, age 75, right hemisphere 44.1
Superior colliculus
nTPM: 50.0
2587 Male, age 74, left hemisphere 56.8
2668 Female, age 75, unknown 55.9
1995 Male, age 72, unknown 54.3
2087 Female, age 72, unknown 53.1
1913 Female, age 42, unknown 50.2
2261 Male, age 18, unknown 48.5
1839 Male, age 51, unknown 48.3
2664 Male, age 75, both hemispheres 46.3
1796 Male, age 53, unknown 45.8
1895 Male, age 76, right hemisphere 41.2
Ventral tegmental area
nTPM: 56.6
2410 Female, age 72, unknown 60.2
2021 Male, age 53, unknown 58.6
2223 Female, age 72, unknown 57.7
1915 Female, age 42, unknown 56.6
2218 Male, age 76, both hemispheres 53.7
1942 Male, age 51, unknown 52.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.5
Samples: 139

Max nTPM: 207.8
Min nTPM: 51.1
Std nTPM: 23.1
Median nTPM: 76.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 207.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 170.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 154.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 137.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 136.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 123.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 121.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 118.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 117.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 116.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 115.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 175.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 175.5
FF:10158-103A5 76 years, female 175.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.6
Samples: 4

Max nTPM: 56.4
Min nTPM: 46.6
Sample A Female 56.4
Sample B Female 46.6
Sample C Male 51.0
Sample D Male 56.3
Midbrain
nTPM: 52.0
Samples: 4

Max nTPM: 68.9
Min nTPM: 43.1
Sample A Female 68.9
Sample B Female 49.8
Sample C Male 46.2
Sample D Male 43.1
Periaqueductal gray
nTPM: 45.0
Samples: 3

Max nTPM: 49.7
Min nTPM: 39.5
Sample B Female 49.7
Sample C Male 45.7
Sample D Male 39.5
Superior colliculi
nTPM: 51.0
Samples: 4

Max nTPM: 54.1
Min nTPM: 48.1
Sample A Female 54.1
Sample B Female 48.1
Sample C Male 51.8
Sample D Male 50.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.5
Sample A Male 10.0
Sample B Male 10.5
Sample C Female 10.0
Sample D Female 9.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68744988 Antisense, RP_050210_01_A09, Mouse strain C57BL/6J (56 days, male) 1.4

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