MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.1 nTPM
HPA Brain:31.1 nTPM
GTEx:70.1 nTPM
FANTOM5:146.9 Scaled Tags Per Million
Pig:138.2 nTPM
Mouse:148.4 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.0
1870 Female, age 42, unknown 34.2
2411 Female, age 72, unknown 29.8
1827 Male, age 72, unknown 28.6
1833 Male, age 53, unknown 26.6
1830 Male, age 51, unknown 26.5
2019 Male, age 18, unknown 26.4
2666 Male, age 74, left hemisphere 25.3
2828 Female, age 72, unknown 23.7
2219 Male, age 76, both hemispheres 22.9
2586 Male, age 75, left hemisphere 16.2
Dorsal raphe nucleus
nTPM: 29.2
2298 Female, age 72, unknown 35.4
2750 Male, age 76, both hemispheres 31.6
2016 Female, age 72, unknown 27.0
1828 Male, age 53, unknown 26.5
2047 Male, age 72, unknown 25.7
Inferior colliculus
nTPM: 27.3
2097 Female, age 72, unknown 33.0
1848 Female, age 42, unknown 26.7
1890 Male, age 53, unknown 25.7
2849 Male, age 72, unknown 24.0
Median raphe nucleus
nTPM: 31.1
2220 Male, age 76, midline 31.1
Periaquaductal grey, anterior
nTPM: 29.0
1947 Male, age 18, unknown 33.5
2502 Female, age 75, unknown 29.6
1795 Male, age 51, unknown 24.0
Periaquaductal grey, dorsal
nTPM: 26.0
2850 Male, age 76, both hemispheres 30.0
1840 Male, age 53, unknown 26.2
2464 Female, age 72, unknown 25.1
1831 Male, age 72, unknown 22.8
Periaquaductal grey, lateral
nTPM: 25.5
2272 Male, age 74, both hemispheres 26.4
2140 Male, age 76, both hemispheres 25.1
2053 Male, age 18, unknown 25.0
Pretectal area
nTPM: 28.5
2224 Female, age 72, unknown 32.2
2007 Male, age 72, unknown 31.3
1817 Female, age 42, unknown 30.7
1815 Male, age 53, unknown 30.0
2825 Male, age 18, unknown 29.7
2273 Male, age 74, both hemispheres 29.4
1816 Male, age 51, unknown 29.1
2667 Female, age 75, unknown 28.8
1944 Female, age 72, unknown 26.2
2316 Male, age 76, right hemisphere 26.0
2407 Male, age 75, both hemispheres 20.5
Red nucleus
nTPM: 29.0
1821 Female, age 72, unknown 40.5
1954 Female, age 42, unknown 33.8
1904 Male, age 53, unknown 31.6
2503 Female, age 72, unknown 31.4
1865 Male, age 51, unknown 30.7
2823 Male, age 76, right hemisphere 29.7
2725 Female, age 75, unknown 28.3
2769 Male, age 72, unknown 28.0
2227 Male, age 72, unknown 27.4
2785 Male, age 18, unknown 25.6
2588 Male, age 74, left hemisphere 21.5
2584 Male, age 75, left hemisphere 19.2
Substantia nigra
nTPM: 28.1
2241 Male, age 72, unknown 36.9
1889 Female, age 72, unknown 31.0
1851 Male, age 51, unknown 30.4
1916 Female, age 42, unknown 29.9
1941 Male, age 53, unknown 29.3
2409 Female, age 72, unknown 26.9
2665 Male, age 74, both hemispheres 25.4
2590 Female, age 75, unknown 25.1
2699 Male, age 18, unknown 24.3
2583 Male, age 75, right hemisphere 22.0
Superior colliculus
nTPM: 26.3
2587 Male, age 74, left hemisphere 31.0
1895 Male, age 76, right hemisphere 28.5
2668 Female, age 75, unknown 27.8
1913 Female, age 42, unknown 27.3
2261 Male, age 18, unknown 26.9
1839 Male, age 51, unknown 26.3
2087 Female, age 72, unknown 25.9
1796 Male, age 53, unknown 25.5
1995 Male, age 72, unknown 24.5
2664 Male, age 75, both hemispheres 18.7
Ventral tegmental area
nTPM: 28.0
2223 Female, age 72, unknown 30.1
2410 Female, age 72, unknown 29.1
1915 Female, age 42, unknown 28.7
2218 Male, age 76, both hemispheres 28.1
1942 Male, age 51, unknown 26.4
2021 Male, age 53, unknown 25.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.1
Samples: 139

Max nTPM: 114.4
Min nTPM: 46.4
Std nTPM: 11.0
Median nTPM: 69.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 114.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 107.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 102.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 95.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 95.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 93.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 91.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 87.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 87.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 87.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 146.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 146.9
FF:10158-103A5 76 years, female 146.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 138.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.4
Samples: 4

Max nTPM: 159.4
Min nTPM: 95.7
Sample A Female 159.4
Sample B Female 115.9
Sample C Male 130.4
Sample D Male 95.7
Midbrain
nTPM: 138.2
Samples: 4

Max nTPM: 168.2
Min nTPM: 116.9
Sample A Female 168.2
Sample B Female 122.9
Sample C Male 144.6
Sample D Male 116.9
Periaqueductal gray
nTPM: 109.9
Samples: 3

Max nTPM: 125.6
Min nTPM: 97.4
Sample B Female 97.4
Sample C Male 125.6
Sample D Male 106.8
Superior colliculi
nTPM: 134.9
Samples: 4

Max nTPM: 157.6
Min nTPM: 119.3
Sample A Female 157.6
Sample B Female 127.0
Sample C Male 135.5
Sample D Male 119.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 148.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 148.4
Samples: 4

Max nTPM: 150.5
Min nTPM: 145.4
Sample A Male 147.5
Sample B Male 145.4
Sample C Female 150.1
Sample D Female 150.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
413815 Antisense, RP_040809_01_F11, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org