MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.8 nTPM
HPA Brain:42.5 nTPM
GTEx:15.8 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:101.2 nTPM
Mouse:92.0 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.2
2411 Female, age 72, unknown 34.3
2019 Male, age 18, unknown 30.9
2219 Male, age 76, both hemispheres 30.2
1827 Male, age 72, unknown 29.4
2586 Male, age 75, left hemisphere 29.4
2666 Male, age 74, left hemisphere 25.7
1870 Female, age 42, unknown 22.9
1833 Male, age 53, unknown 20.8
1830 Male, age 51, unknown 19.3
2828 Female, age 72, unknown 18.6
Dorsal raphe nucleus
nTPM: 34.4
2298 Female, age 72, unknown 49.2
2047 Male, age 72, unknown 36.9
2750 Male, age 76, both hemispheres 36.5
1828 Male, age 53, unknown 32.6
2016 Female, age 72, unknown 17.1
Inferior colliculus
nTPM: 19.5
2097 Female, age 72, unknown 25.8
1848 Female, age 42, unknown 19.7
1890 Male, age 53, unknown 18.4
2849 Male, age 72, unknown 14.0
Median raphe nucleus
nTPM: 42.5
2220 Male, age 76, midline 42.5
Periaquaductal grey, anterior
nTPM: 31.1
1947 Male, age 18, unknown 34.2
1795 Male, age 51, unknown 32.1
2502 Female, age 75, unknown 26.9
Periaquaductal grey, dorsal
nTPM: 21.4
1831 Male, age 72, unknown 23.5
1840 Male, age 53, unknown 22.4
2850 Male, age 76, both hemispheres 20.5
2464 Female, age 72, unknown 19.0
Periaquaductal grey, lateral
nTPM: 21.1
2272 Male, age 74, both hemispheres 26.2
2053 Male, age 18, unknown 21.4
2140 Male, age 76, both hemispheres 15.6
Pretectal area
nTPM: 33.8
1944 Female, age 72, unknown 58.6
1816 Male, age 51, unknown 55.3
2007 Male, age 72, unknown 48.5
1815 Male, age 53, unknown 42.5
1817 Female, age 42, unknown 41.6
2224 Female, age 72, unknown 32.9
2825 Male, age 18, unknown 22.0
2407 Male, age 75, both hemispheres 20.7
2273 Male, age 74, both hemispheres 20.2
2667 Female, age 75, unknown 16.3
2316 Male, age 76, right hemisphere 13.6
Red nucleus
nTPM: 23.5
2584 Male, age 75, left hemisphere 40.6
2725 Female, age 75, unknown 35.0
1821 Female, age 72, unknown 31.4
2785 Male, age 18, unknown 26.0
1904 Male, age 53, unknown 21.6
1954 Female, age 42, unknown 21.2
2227 Male, age 72, unknown 18.3
1865 Male, age 51, unknown 18.2
2823 Male, age 76, right hemisphere 18.1
2503 Female, age 72, unknown 17.9
2769 Male, age 72, unknown 17.9
2588 Male, age 74, left hemisphere 15.4
Substantia nigra
nTPM: 42.5
1916 Female, age 42, unknown 54.7
1941 Male, age 53, unknown 50.5
2241 Male, age 72, unknown 50.5
2409 Female, age 72, unknown 49.1
1889 Female, age 72, unknown 47.7
1851 Male, age 51, unknown 46.4
2583 Male, age 75, right hemisphere 35.7
2590 Female, age 75, unknown 35.1
2665 Male, age 74, both hemispheres 29.6
2699 Male, age 18, unknown 26.0
Superior colliculus
nTPM: 27.6
2087 Female, age 72, unknown 43.7
2668 Female, age 75, unknown 42.1
2261 Male, age 18, unknown 36.0
1796 Male, age 53, unknown 27.1
1913 Female, age 42, unknown 25.6
1895 Male, age 76, right hemisphere 22.2
2664 Male, age 75, both hemispheres 20.4
1839 Male, age 51, unknown 19.8
2587 Male, age 74, left hemisphere 19.8
1995 Male, age 72, unknown 19.1
Ventral tegmental area
nTPM: 34.5
2410 Female, age 72, unknown 49.6
2218 Male, age 76, both hemispheres 38.0
1915 Female, age 42, unknown 35.7
1942 Male, age 51, unknown 33.7
2223 Female, age 72, unknown 26.0
2021 Male, age 53, unknown 23.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.8
Samples: 139

Max nTPM: 93.7
Min nTPM: 0.0
Std nTPM: 18.8
Median nTPM: 7.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 93.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 91.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 82.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 68.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 67.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 63.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 55.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 55.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 53.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 49.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 47.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 101.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 78.0
Samples: 4

Max nTPM: 115.9
Min nTPM: 27.2
Sample A Female 115.9
Sample B Female 59.2
Sample C Male 109.8
Sample D Male 27.2
Midbrain
nTPM: 84.4
Samples: 4

Max nTPM: 170.1
Min nTPM: 29.3
Sample A Female 29.3
Sample B Female 63.0
Sample C Male 170.1
Sample D Male 75.2
Periaqueductal gray
nTPM: 52.9
Samples: 3

Max nTPM: 68.5
Min nTPM: 45.0
Sample B Female 45.0
Sample C Male 68.5
Sample D Male 45.1
Superior colliculi
nTPM: 101.2
Samples: 4

Max nTPM: 184.8
Min nTPM: 59.2
Sample A Female 77.8
Sample B Female 59.2
Sample C Male 184.8
Sample D Male 82.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.1
Samples: 4

Max nTPM: 96.2
Min nTPM: 86.1
Sample A Male 91.8
Sample B Male 94.1
Sample C Female 86.1
Sample D Female 96.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
70429435 Antisense, RP_050614_01_F08, Mouse strain C57BL/6J (56 days, male) 3.1

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