MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.3 nTPM
HPA Brain:37.0 nTPM
GTEx:68.3 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:65.6 nTPM
Mouse:63.2 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.7
2219 Male, age 76, both hemispheres 37.4
2586 Male, age 75, left hemisphere 36.8
1827 Male, age 72, unknown 34.3
2019 Male, age 18, unknown 33.0
2411 Female, age 72, unknown 31.7
1870 Female, age 42, unknown 30.4
2666 Male, age 74, left hemisphere 30.4
2828 Female, age 72, unknown 30.4
1833 Male, age 53, unknown 27.5
1830 Male, age 51, unknown 25.3
Dorsal raphe nucleus
nTPM: 31.1
2298 Female, age 72, unknown 36.7
2047 Male, age 72, unknown 32.7
2750 Male, age 76, both hemispheres 32.0
1828 Male, age 53, unknown 29.2
2016 Female, age 72, unknown 24.7
Inferior colliculus
nTPM: 29.2
1890 Male, age 53, unknown 31.1
2097 Female, age 72, unknown 30.2
1848 Female, age 42, unknown 29.6
2849 Male, age 72, unknown 26.0
Median raphe nucleus
nTPM: 31.9
2220 Male, age 76, midline 31.9
Periaquaductal grey, anterior
nTPM: 32.7
1795 Male, age 51, unknown 35.7
1947 Male, age 18, unknown 32.4
2502 Female, age 75, unknown 30.1
Periaquaductal grey, dorsal
nTPM: 25.9
1840 Male, age 53, unknown 28.1
2850 Male, age 76, both hemispheres 27.7
2464 Female, age 72, unknown 24.9
1831 Male, age 72, unknown 23.1
Periaquaductal grey, lateral
nTPM: 29.5
2272 Male, age 74, both hemispheres 32.6
2053 Male, age 18, unknown 29.2
2140 Male, age 76, both hemispheres 26.7
Pretectal area
nTPM: 34.9
2007 Male, age 72, unknown 40.9
2667 Female, age 75, unknown 40.8
1816 Male, age 51, unknown 40.7
1944 Female, age 72, unknown 40.2
1817 Female, age 42, unknown 38.8
1815 Male, age 53, unknown 35.6
2273 Male, age 74, both hemispheres 33.7
2224 Female, age 72, unknown 31.8
2407 Male, age 75, both hemispheres 30.5
2825 Male, age 18, unknown 28.2
2316 Male, age 76, right hemisphere 22.4
Red nucleus
nTPM: 28.2
1821 Female, age 72, unknown 30.4
2725 Female, age 75, unknown 30.3
1904 Male, age 53, unknown 30.2
2503 Female, age 72, unknown 29.2
2785 Male, age 18, unknown 29.2
1954 Female, age 42, unknown 29.0
1865 Male, age 51, unknown 28.8
2227 Male, age 72, unknown 27.6
2823 Male, age 76, right hemisphere 27.0
2584 Male, age 75, left hemisphere 26.2
2769 Male, age 72, unknown 25.8
2588 Male, age 74, left hemisphere 25.2
Substantia nigra
nTPM: 37.0
1916 Female, age 42, unknown 59.0
1851 Male, age 51, unknown 43.8
1889 Female, age 72, unknown 41.6
2241 Male, age 72, unknown 39.0
1941 Male, age 53, unknown 38.5
2699 Male, age 18, unknown 37.9
2665 Male, age 74, both hemispheres 28.9
2583 Male, age 75, right hemisphere 28.3
2590 Female, age 75, unknown 27.7
2409 Female, age 72, unknown 25.1
Superior colliculus
nTPM: 30.9
2087 Female, age 72, unknown 36.3
1796 Male, age 53, unknown 36.0
2668 Female, age 75, unknown 33.7
2261 Male, age 18, unknown 33.2
1895 Male, age 76, right hemisphere 29.7
2587 Male, age 74, left hemisphere 29.3
1913 Female, age 42, unknown 29.0
1995 Male, age 72, unknown 28.7
2664 Male, age 75, both hemispheres 28.4
1839 Male, age 51, unknown 25.3
Ventral tegmental area
nTPM: 35.4
1915 Female, age 42, unknown 41.7
2410 Female, age 72, unknown 40.8
2218 Male, age 76, both hemispheres 39.5
1942 Male, age 51, unknown 32.6
2223 Female, age 72, unknown 31.5
2021 Male, age 53, unknown 26.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.3
Samples: 139

Max nTPM: 128.1
Min nTPM: 32.0
Std nTPM: 17.4
Median nTPM: 65.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 128.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 114.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 109.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 109.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 109.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 108.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 98.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 97.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 96.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 95.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 94.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.9
FF:10158-103A5 76 years, female 18.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.3
Samples: 4

Max nTPM: 82.7
Min nTPM: 35.0
Sample A Female 82.7
Sample B Female 42.9
Sample C Male 56.6
Sample D Male 35.0
Midbrain
nTPM: 54.2
Samples: 4

Max nTPM: 62.4
Min nTPM: 48.0
Sample A Female 57.7
Sample B Female 48.0
Sample C Male 62.4
Sample D Male 48.7
Periaqueductal gray
nTPM: 37.2
Samples: 3

Max nTPM: 43.0
Min nTPM: 32.5
Sample B Female 36.2
Sample C Male 43.0
Sample D Male 32.5
Superior colliculi
nTPM: 65.6
Samples: 4

Max nTPM: 84.7
Min nTPM: 53.5
Sample A Female 84.7
Sample B Female 53.5
Sample C Male 69.0
Sample D Male 55.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.1
Samples: 4

Max nTPM: 69.2
Min nTPM: 59.3
Sample A Male 69.2
Sample B Male 59.8
Sample C Female 59.3
Sample D Female 64.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68191414 Antisense, RP_041129_01_B05, Mouse strain C57BL/6J (56 days, male) 1.4

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